ChargedPidMVAMulticlassModule.cc

/**************************************************************************
 * basf2 (Belle II Analysis Software Framework)                           *
 * Author: The Belle II Collaboration                                     *
 *                                                                        *
 * See git log for contributors and copyright holders.                    *
 * This file is licensed under LGPL-3.0, see LICENSE.md.                  *
 **************************************************************************/
//THIS MODULE
#include <analysis/modules/ChargedParticleIdentificator/ChargedPidMVAMulticlassModule.h>
 
//ANALYSIS
#include <analysis/dataobjects/Particle.h>
#include <analysis/DecayDescriptor/DecayDescriptor.h>
#include <analysis/variables/ECLVariables.h>
 
// FRAMEWORK
#include <framework/logging/LogConfig.h>
#include <framework/logging/LogSystem.h>
#include <mva/interface/Interface.h>
#include <mva/methods/TMVA.h>
 
using namespace Belle2;
 
REG_MODULE(ChargedPidMVAMulticlass);
 
ChargedPidMVAMulticlassModule::ChargedPidMVAMulticlassModule() : Module()
{
  setDescription("This module evaluates the response of a multi-class MVA trained for global charged particle identification.. It takes the Particle objects in the input charged stable particles' ParticleLists, calculates the MVA per-class score using the appropriate xml weight file, and adds it as ExtraInfo to the Particle objects.");
 
  setPropertyFlags(c_ParallelProcessingCertified);
 
  addParam("particleLists",
           m_decayStrings,
           "The input list of DecayStrings, where each selected (^) daughter should correspond to a standard charged ParticleList, e.g. ['Lambda0:sig -> ^p+ ^pi-', 'J/psi:sig -> ^mu+ ^mu-']. One can also directly pass a list of standard charged ParticleLists, e.g. ['e+:my_electrons', 'pi+:my_pions']. Note that charge-conjugated ParticleLists will automatically be included.",
           std::vector<std::string>());
  addParam("payloadName",
           m_payload_name,
           "The name of the database payload object with the MVA weights.",
           std::string("ChargedPidMVAWeights"));
  addParam("chargeIndependent",
           m_charge_independent,
           "Specify whether to use a charge-independent training of the MVA.",
           bool(false));
  addParam("useECLOnlyTraining",
           m_ecl_only,
           "Specify whether to use an ECL-only training of the MVA.",
           bool(false));
}
ChargedPidMVAMulticlassModule::ChargedPidMVAMulticlassModule() : Module() {…}
 
 
ChargedPidMVAMulticlassModule::~ChargedPidMVAMulticlassModule() = default;
 
 
void ChargedPidMVAMulticlassModule::initialize()
{
  m_event_metadata.isRequired();
 
  m_weightfiles_representation = std::make_unique<DBObjPtr<ChargedPidMVAWeights>>(m_payload_name);
 
  /* Initialize MVA if the payload has changed and now. */
  (*m_weightfiles_representation.get()).addCallback([this]() { initializeMVA(); });
  initializeMVA();
}
void ChargedPidMVAMulticlassModule::initialize() {…}
 
 
void ChargedPidMVAMulticlassModule::beginRun()
{
}
void ChargedPidMVAMulticlassModule::beginRun() {…}
 
 
void ChargedPidMVAMulticlassModule::event()
{
 
  // Debug strings per log level.
  std::map<int, std::string> debugStr = {
    {11, ""},
    {12, ""}
  };
 
  B2DEBUG(11, "EVENT: " << m_event_metadata->getEvent());
 
  for (auto decayString : m_decayStrings) {
 
    DecayDescriptor decayDescriptor;
    decayDescriptor.init(decayString);
    auto pListName = decayDescriptor.getMother()->getFullName();
 
    unsigned short m_nSelectedDaughters = decayDescriptor.getSelectionNames().size();
    StoreObjPtr<ParticleList> pList(pListName);
 
    if (!pList) {
      B2FATAL("ParticleList: " << pListName << " could not be found. Aborting...");
    }
 
    auto pListSize = pList->getListSize();
 
    B2DEBUG(11, "ParticleList: " << pList->getParticleListName() << " - N = " << pListSize << " particles.");
 
    const auto nTargetParticles = (m_nSelectedDaughters == 0) ? pListSize : pListSize * m_nSelectedDaughters;
 
    // Need to get an absolute value in order to check if in Const::ChargedStable.
    std::vector<int> pdgs;
    if (m_nSelectedDaughters == 0) {
      pdgs.push_back(pList->getPDGCode());
    } else {
      pdgs = decayDescriptor.getSelectionPDGCodes();
    }
    for (auto pdg : pdgs) {
      // Check if this ParticleList is made up of legit Const::ChargedStable particles.
      if (!(*m_weightfiles_representation.get())->isValidPdg(abs(pdg))) {
        B2FATAL("PDG: " << pdg << " of ParticleList: " << pListName <<
                " is not that of a valid particle in Const::chargedStableSet! Aborting...");
      }
    }
    std::vector<const Particle*> targetParticles;
    if (m_nSelectedDaughters > 0) {
      for (unsigned int iPart(0); iPart < pListSize; ++iPart) {
        auto* iParticle = pList->getParticle(iPart);
        auto daughters = decayDescriptor.getSelectionParticles(iParticle);
        for (auto* iDaughter : daughters) {
          targetParticles.push_back(iDaughter);
        }
      }
    }
 
    for (unsigned int ipart(0); ipart < nTargetParticles; ++ipart) {
 
      const Particle* particle = (m_nSelectedDaughters > 0) ? targetParticles[ipart] : pList->getParticle(ipart);
 
      if (!(*m_weightfiles_representation.get())->hasImplicitNaNmasking()) {
        // LEGACY TRAININGS: always require a track-cluster match.
        const ECLCluster* eclCluster = particle->getECLCluster();
        if (!eclCluster) {
          B2DEBUG(11, "\nParticle [" << ipart << "] has invalid Track-ECLCluster relation, skip MVA application...");
          continue;
        }
      }
 
      // Retrieve the index for the correct MVA expert and dataset,
      // given the reconstructed (polar angle, p, charge)
      auto thVarName = (*m_weightfiles_representation.get())->getThetaVarName();
      auto theta = std::get<double>(Variable::Manager::Instance().getVariable(thVarName)->function(particle));
      auto p = particle->getP();
      // Set a dummy charge of zero to pick charge-independent payloads, if requested.
      auto charge = (!m_charge_independent) ? particle->getCharge() : 0.0;
      if (std::isnan(theta) or std::isnan(p) or std::isnan(charge)) {
        B2DEBUG(11, "\nParticle [" << ipart << "] has invalid input variable, skip MVA application..." <<
                " polar angle: " << theta << ", p: " << p << ", charge: " << charge);
        continue;
      }
 
      int idx_theta, idx_p, idx_charge;
      auto index = (*m_weightfiles_representation.get())->getMVAWeightIdx(theta, p, charge, idx_theta, idx_p, idx_charge);
 
      auto hasMatch = std::isnormal(Variable::eclClusterTrackMatched(particle));
 
      debugStr[11] += "\n";
      debugStr[11] += ("Particle [" + std::to_string(ipart) + "]\n");
      debugStr[11] += ("Has ECL cluster match? " + std::to_string(hasMatch) + "\n");
      debugStr[11] += ("polar angle: " + thVarName + " = " + std::to_string(theta) + " [rad]\n");
      debugStr[11] += ("p = " + std::to_string(p) + " [GeV/c]\n");
      if (!m_charge_independent) {
        debugStr[11] += ("charge = " + std::to_string(charge) + "\n");
      }
      debugStr[11] += ("Is brems corrected ? " + std::to_string(particle->hasExtraInfo("bremsCorrected")) + "\n");
      debugStr[11] += ("Weightfile idx = " + std::to_string(index) + " - (polar angle, p, charge) = (" + std::to_string(
                         idx_theta) + ", " + std::to_string(idx_p) + ", " +
                       std::to_string(idx_charge) + ")\n");
      if (m_cuts.at(index)) {
        debugStr[11] += ("Category cut: " + m_cuts.at(index)->decompile() + "\n");
      }
 
      B2DEBUG(11, debugStr[11]);
      debugStr[11].clear();
 
      // Don't even bother if particle does not fulfil the category selection.
      if (m_cuts.at(index)) {
        if (!m_cuts.at(index)->check(particle)) {
          B2DEBUG(11, "\nParticle [" << ipart << "] didn't pass MVA category cut, skip MVA application...");
          continue;
        }
      }
 
      // Fill the MVA::SingleDataset w/ variables and spectators.
 
      debugStr[11] += "\n";
      debugStr[11] += "MVA variables:\n";
 
      auto nvars = m_variables.at(index).size();
      for (unsigned int ivar(0); ivar < nvars; ++ivar) {
 
        auto varobj = m_variables.at(index).at(ivar);
 
        double var = std::numeric_limits<double>::quiet_NaN();
        auto var_result = varobj->function(particle);
        if (std::holds_alternative<double>(var_result)) {
          var = std::get<double>(var_result);
        } else if (std::holds_alternative<int>(var_result)) {
          var = std::get<int>(var_result);
        } else if (std::holds_alternative<bool>(var_result)) {
          var = std::get<bool>(var_result);
        } else {
          B2ERROR("Variable '" << varobj->name << "' has wrong data type! It must be one of double, integer, or bool.");
        }
 
        if (!(*m_weightfiles_representation.get())->hasImplicitNaNmasking()) {
          // LEGACY TRAININGS: manual imputation value of -999 for NaN (undefined) variables. Needed by TMVA.
          var = (std::isnan(var)) ? -999.0 : var;
        }
 
        debugStr[11] += ("\tvar[" + std::to_string(ivar) + "] : " + varobj->name + " = " + std::to_string(var) + "\n");
 
        m_datasets.at(index)->m_input[ivar] = var;
 
      }
 
      B2DEBUG(11, debugStr[11]);
      debugStr[11].clear();
 
      // Check spectators only when in debug mode.
      if (LogSystem::Instance().isLevelEnabled(LogConfig::c_Debug, 12)) {
 
        debugStr[12] += "\n";
        debugStr[12] += "MVA spectators:\n";
 
        auto nspecs = m_spectators.at(index).size();
        for (unsigned int ispec(0); ispec < nspecs; ++ispec) {
 
          auto specobj = m_spectators.at(index).at(ispec);
 
          double spec = std::numeric_limits<double>::quiet_NaN();
          auto spec_result = specobj->function(particle);
          if (std::holds_alternative<double>(spec_result)) {
            spec = std::get<double>(spec_result);
          } else if (std::holds_alternative<int>(spec_result)) {
            spec = std::get<int>(spec_result);
          } else if (std::holds_alternative<bool>(spec_result)) {
            spec = std::get<bool>(spec_result);
          } else {
            B2ERROR("Variable '" << specobj->name << "' has wrong data type! It must be one of double, integer, or bool.");
          }
 
          debugStr[12] += ("\tspec[" + std::to_string(ispec) + "] : " + specobj->name + " = " + std::to_string(spec) + "\n");
 
          m_datasets.at(index)->m_spectators[ispec] = spec;
 
        }
 
        B2DEBUG(12, debugStr[12]);
        debugStr[12].clear();
 
      }
 
      // Compute MVA score for each available class.
 
      debugStr[11] += "\n";
      debugStr[12] += "\n";
      debugStr[11] += "MVA response:\n";
 
      std::string score_varname("");
      // We deal w/ a SingleDataset, so 0 is the only existing component by construction.
      std::vector<float> scores = m_experts.at(index)->applyMulticlass(*m_datasets.at(index))[0];
 
      for (unsigned int classID(0); classID < m_classes.size(); ++classID) {
 
        const std::string className(m_classes.at(classID));
 
        score_varname = "pidChargedBDTScore_" + className;
 
        if (m_ecl_only) {
          score_varname += "_" + std::to_string(Const::ECL);
        } else {
          for (const Const::EDetector& det : Const::PIDDetectorSet::set()) {
            score_varname += "_" + std::to_string(det);
          }
        }
 
        debugStr[11] += ("\tclass[" + std::to_string(classID) + "] = " + className + " - score = " +  std::to_string(
                           scores[classID]) + "\n");
        debugStr[12] += ("\textraInfo: " + score_varname + "\n");
 
        // Store the MVA score as a new particle object property.
        m_particles[particle->getArrayIndex()]->writeExtraInfo(score_varname, scores[classID]);
 
      }
 
      B2DEBUG(11, debugStr[11]);
      B2DEBUG(12, debugStr[12]);
      debugStr[11].clear();
      debugStr[12].clear();
 
    }
 
  }
 
  // Clear the debug string map before next event.
  debugStr.clear();
 
}
void ChargedPidMVAMulticlassModule::event() {…}
 
void ChargedPidMVAMulticlassModule::registerAliasesLegacy()
{
 
  std::string epsilon("1e-8");
 
  std::map<std::string, std::string> aliasesLegacy;
 
  aliasesLegacy.insert(std::make_pair("__event__", "evtNum"));
 
  for (Const::DetectorSet::Iterator it = Const::PIDDetectorSet::set().begin();
       it != Const::PIDDetectorSet::set().end(); ++it) {
 
    auto detName = Const::parseDetectors(*it);
 
    aliasesLegacy.insert(std::make_pair("missingLogL_" + detName, "pidMissingProbabilityExpert(" + detName + ")"));
 
    for (auto& [pdgId, fullName] : m_stdChargedInfo) {
 
      std::string alias = fullName + "ID_" + detName;
      std::string var = "pidProbabilityExpert(" + std::to_string(pdgId) + ", " + detName + ")";
      std::string aliasLogTrf = alias + "_LogTransfo";
      std::string varLogTrf = "formula(-1. * log10(formula(((1. - " + alias + ") + " + epsilon + ") / (" + alias + " + " + epsilon +
                              "))))";
 
      aliasesLegacy.insert(std::make_pair(alias, var));
      aliasesLegacy.insert(std::make_pair(aliasLogTrf, varLogTrf));
 
      if (it.getIndex() == 0) {
        aliasLogTrf = fullName + "ID_LogTransfo";
        varLogTrf = "formula(-1. * log10(formula(((1. - " + fullName + "ID) + " + epsilon + ") / (" + fullName + "ID + " + epsilon +
                    "))))";
        aliasesLegacy.insert(std::make_pair(aliasLogTrf, varLogTrf));
      }
 
    }
 
  }
 
  B2INFO("Setting hard-coded aliases for the ChargedPidMVA algorithm.");
 
  std::string debugStr("\n");
  for (const auto& [alias, variable] : aliasesLegacy) {
    debugStr += (alias + " --> " + variable + "\n");
    if (!Variable::Manager::Instance().addAlias(alias, variable)) {
      B2ERROR("Something went wrong with setting alias: " << alias << " for variable: " << variable);
    }
  }
  B2DEBUG(10, debugStr);
 
}
void ChargedPidMVAMulticlassModule::registerAliasesLegacy() {…}
 
 
void ChargedPidMVAMulticlassModule::registerAliases()
{
 
  auto aliases = (*m_weightfiles_representation.get())->getAliases();
 
  if (!aliases->empty()) {
 
    B2INFO("Setting aliases for the ChargedPidMVA algorithm read from the payload.");
 
    std::string debugStr("\n");
    for (const auto& [alias, variable] : *aliases) {
      if (alias != variable) {
        debugStr += (alias + " --> " + variable + "\n");
        if (!Variable::Manager::Instance().addAlias(alias, variable)) {
          B2ERROR("Something went wrong with setting alias: " << alias << " for variable: " << variable);
        }
      }
    }
    B2DEBUG(10, debugStr);
 
    return;
 
  }
 
  // Manually set aliases - for bw compatibility
  this->registerAliasesLegacy();
 
}
void ChargedPidMVAMulticlassModule::registerAliases() {…}
 
 
void ChargedPidMVAMulticlassModule::initializeMVA()
{
 
  B2INFO("Run: " << m_event_metadata->getRun() <<
         ". Load supported MVA interfaces for multi-class charged particle identification...");
 
  // Set the necessary variable aliases from the payload.
  this->registerAliases();
 
  // The supported methods have to be initialized once (calling it more than once is safe).
  MVA::AbstractInterface::initSupportedInterfaces();
  auto supported_interfaces = MVA::AbstractInterface::getSupportedInterfaces();
 
  B2INFO("\tLoading weightfiles from the payload class.");
 
  auto serialized_weightfiles = (*m_weightfiles_representation.get())->getMVAWeightsMulticlass();
  auto nfiles = serialized_weightfiles->size();
 
  B2INFO("\tConstruct the MVA experts and datasets from N = " << nfiles << " weightfiles...");
 
  // The size of the vectors must correspond
  // to the number of available weightfiles for this pdgId.
  m_experts.resize(nfiles);
  m_datasets.resize(nfiles);
  m_cuts.resize(nfiles);
  m_variables.resize(nfiles);
  m_spectators.resize(nfiles);
 
  for (unsigned int idx(0); idx < nfiles; idx++) {
 
    B2DEBUG(12, "\t\tweightfile[" << idx << "]");
 
    // De-serialize the string into an MVA::Weightfile object.
    std::stringstream ss(serialized_weightfiles->at(idx));
    auto weightfile = MVA::Weightfile::loadFromStream(ss);
 
    MVA::GeneralOptions general_options;
    weightfile.getOptions(general_options);
 
    // Store the list of pointers to the relevant variables for this xml file.
    Variable::Manager& manager = Variable::Manager::Instance();
    m_variables[idx] = manager.getVariables(general_options.m_variables);
    m_spectators[idx] = manager.getVariables(general_options.m_spectators);
 
    B2DEBUG(12, "\t\tRetrieved N = " << general_options.m_variables.size()
            << " variables, N = " << general_options.m_spectators.size()
            << " spectators");
 
    // Store an MVA::Expert object.
    m_experts[idx] = supported_interfaces[general_options.m_method]->getExpert();
    m_experts.at(idx)->load(weightfile);
 
    B2DEBUG(12, "\t\tweightfile loaded successfully into expert[" << idx << "]!");
 
    // Store an MVA::SingleDataset object, in which we will save our features later...
    std::vector<float> v(general_options.m_variables.size(), 0.0);
    std::vector<float> s(general_options.m_spectators.size(), 0.0);
    m_datasets[idx] = std::make_unique<MVA::SingleDataset>(general_options, v, 1.0, s);
 
    B2DEBUG(12, "\t\tdataset[" << idx << "] created successfully!");
 
    // Compile cut for this category.
    const auto cuts = (*m_weightfiles_representation.get())->getCutsMulticlass();
    const auto cutstr = (!cuts->empty()) ? cuts->at(idx) : "";
    m_cuts[idx] = (!cutstr.empty()) ? Variable::Cut::compile(cutstr) : nullptr;
 
    B2DEBUG(12, "\t\tcut[" << idx << "] created successfully!");
 
    // Register class names only once.
    if (idx == 0) {
      // QUESTION: could this be made generic?
      // Problem is I am not sure how other MVA methods deal with multi-classification,
      // so it's difficult to make an abstract interface that surely works for everything... ideas?
      MVA::TMVAOptionsMulticlass specific_options;
      weightfile.getOptions(specific_options);
 
      if (specific_options.m_classes.empty()) {
        B2FATAL("MVA::SpecificOptions of weightfile[" << idx <<
                "] has no registered MVA classes! This shouldn't happen in multi-class mode. Aborting...");
      }
 
      m_classes.clear();
      for (const auto& cls : specific_options.m_classes) {
        m_classes.push_back(cls);
      }
 
    }
  }
 
}
void ChargedPidMVAMulticlassModule::initializeMVA() {…}