create_and_plot_magneticfield.py

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
 
 
 
import os
from basf2 import Path, process
import ROOT as root
import numpy as np
 
import matplotlib as mpl
# switch to non-interactive backend
mpl.use("Agg")
from matplotlib import pyplot as pl
from matplotlib.backends.backend_pdf import PdfPages
 
 
 
scan_type = "zx"
stepsU = (1800, -400., 500.)
stepsV = (1600, -400., 400.)
fieldtype = "MagneticField"
filename = "fieldmap-%s.pdf" % scan_type
# if true, the magnetic field will be shown using a blue-white-red gradient,
# white being no field.
show_color = True
# if contours is defined and non empty, contour lines at the specified field
# strengths are drawn on top of the color map
show_contours = None
# colours for the chosen contours: can either be None, a single color name or a
# list of color names matching the chosen contours
contour_colors = 'k'
# line width of contour lines. Can either be one number or an array of numbers
# denoting the width of each line
contour_width = 0.1
 
# example: show 1.4 to 1.6 tesla contours in blue, cyan, green, magenta, red
# show_contours = [1.4, 1.45, 1.5, 1.55, 1.6]
# contour_colors = ['b', 'c', 'g', 'm', 'r']
 
 
 
fieldmap_file = os.path.splitext(filename)[0] + "-fieldmap.root"
material_file = os.path.splitext(filename)[0] + "-material.root"
 
# set Materialscan plane to be consistent with magnetic field map
if scan_type == "xy":
    material_plane = [0, 0, -0.1, 1, 0, 0, 0, 1, 0]
elif scan_type == "zx":
    material_plane = [0, -0.1, 0, 0, 0, 1, 1, 0, 0]
elif scan_type == "zy":
    material_plane = [-0.1, 0, 0, 0, 0, 1, 0, 1, 0]
 
main = Path()
# create modules
main.add_module('EventInfoSetter')
main.add_module('Gearbox')
geometry = main.add_module('Geometry')
main.add_module('FullSim')
# override field if we want something different than the default
if fieldtype != "MagneticField":
    geometry.param({
        "useDB": False,
        "excludedComponents": ["MagneticField"],
        "additionalComponents": [fieldtype],
    })
 
# Field map creator
main.add_module('CreateFieldMap', **{
    'filename': fieldmap_file,
    "type": scan_type,
    "nU": stepsU[0],
    "minU": stepsU[1],
    "maxU": stepsU[2],
    "nV": stepsV[0],
    "minV": stepsV[1],
    "maxV": stepsV[2],
})
 
# Material map creator
main.add_module('MaterialScan', **{
    'Filename': material_file,
    'spherical': False,
    'planar': True,
    'planar.plane': 'custom',
    'planar.custom': material_plane,
    'planar.maxDepth': 0.2,
    'planar.nU': stepsU[0],
    'planar.minU': stepsU[1],
    'planar.maxU': stepsU[2],
    'planar.nV': stepsV[0],
    'planar.minV': stepsV[1],
    'planar.maxV': stepsV[2],
    'planar.splitByMaterials': False,
    'planar.ignored': ['Air', 'Vacuum', 'G4_AIR', 'ColdAir'],
})
 
# Process one event to perform the scans
process(main)
 
 
 
 
def get_hist_data(hist):
    """Obtain the data and extent of a ROOT TH2 as a numpy array"""
    nbinsX = hist.GetNbinsX()
    nbinsY = hist.GetNbinsY()
    data = np.frombuffer(hist.GetArray(), count=hist.GetSize())
    # rehsape and strip overflow/underflow bins
    data = data.reshape(nbinsY + 2, nbinsX + 2)[1:-1, 1:-1]
 
    xmin = hist.GetXaxis().GetXmin()
    xmax = hist.GetXaxis().GetXmax()
    ymin = hist.GetYaxis().GetXmin()
    ymax = hist.GetYaxis().GetXmax()
 
    return data, (xmin, xmax, ymin, ymax)
 
 
def plotMap(axes, data, extent, cmap, **kwargs):
    """Plot either material or field map"""
    return axes.imshow(data, extent=extent, origin="lower", cmap=cmap,
                       aspect="auto", interpolation="nearest", **kwargs)
 
 
# open root files we just created
rfieldmap_file = root.TFile(fieldmap_file)
rmaterial_file = root.TFile(material_file)
# get the material map
mat_hist = rmaterial_file.Get("Planar/All_Regions_x0")
mat_data, mat_extent = get_hist_data(mat_hist)
# obtain nice colormaps
cmap_fieldmap = mpl.cm.get_cmap('seismic')
cmap_material = mpl.cm.get_cmap('binary')
# create pdf file and fill with plots
pdf = PdfPages(filename)
for component in ["Bx", "By", "Bz", "B"]:
    print("Create %s fieldmap plot" % component)
    h = rfieldmap_file.Get(component)
    data, extent = get_hist_data(h)
    # we need the scale to be symmetric so find out what is the maximal
    # absolute value and we choose a minimum scale
    field_max = max(np.abs(data).max(), 0.1)
    f = pl.figure()
    a = f.add_subplot(111)
    # plot material
    lognorm = mpl.colors.LogNorm()
    plotMap(a, mat_data, mat_extent, cmap_material, norm=lognorm)
    # and overlay magnetic field
    if show_color:
        m = plotMap(a, data, extent, cmap_fieldmap, alpha=0.9,
                    vmin=-field_max, vmax=field_max)
        # add a colorbar and set the label
        cb = f.colorbar(m)
        if len(component) == 1:
            cb.set_label(r"$B/{\rm T}$")
        else:
            cb.set_label(r"$B_%s/{\rm T}$" % component[1])
 
    if show_contours is not None and len(show_contours) > 0:
        # get bin centers in x and y
        x, xstep = np.linspace(extent[0], extent[1], h.GetNbinsX() + 1,
                               retstep=True)
        x += xstep / 2
        y, ystep = np.linspace(extent[2], extent[3], h.GetNbinsY() + 1,
                               retstep=True)
        y += ystep / 2
        x, y = np.meshgrid(x[:-1], y[:-1])
        # draw contour plot and label it
        cs = a.contour(x, y, data, levels=show_contours, colors=contour_colors,
                       linewidths=contour_width)
        a.clabel(cs, fmt="%.2f T", fontsize=6)
 
    # label the plot
    a.set_title(h.GetTitle())
    a.set_xlabel(r"$%s/{\rm cm}$" % scan_type[0])
    a.set_ylabel(r"$%s/{\rm cm}$" % scan_type[1])
    # findally, save the plot
    pdf.savefig(f)
 
pdf.close()