condition_checker.py

#!/usr/bin/env python3
# -*- coding: utf-8 -*-
 
 
 
"""\
This module contains classes for plotting calibration constants.
"""
 
__all__ = ["ConditionCheckerBase", "PXDMaskedPixelsChecker", "PXDDeadPixelsChecker", "PXDOccupancyInfoChecker"]
 
from abc import ABC, abstractmethod
from ROOT import Belle2
import ROOT
import numpy as np
from root_numpy import array2hist
from pxd.utils import get_sensor_graphs, get_sensor_maps, sensorID_list
from pxd.utils import latex_r, nPixels, nVCells, nUCells
 
# import basf2
 
# lookup dictionary for finding a checker based on objType
__checker_dict__ = {
    Belle2.PXDMaskedPixelPar: "PXDMaskedPixelsChecker",
    Belle2.PXDDeadPixelPar: "PXDDeadPixelsChecker",
    Belle2.PXDOccupancyInfoPar: "PXDOccupancyInfoChecker",
    Belle2.PXDGainMapPar: "PXDGainMapChecker",
}
 
# plot categories and styles for PXDHotPixelMasking calibration
type_list = ['hot', 'dead', 'hot_dead', 'occ_no_mask', 'occ_masked']
# label_list = ['Hot', 'Dead', 'Hot/Dead', 'Occupancy (No Mask)', 'Occupancy (With Mask)']
label_list = ['Hot pixels', 'Dead pixels', 'Hot/Dead pixels', 'No Mask', 'With Mask']
color_list = [ROOT.kRed + 1, ROOT.kAzure - 5, ROOT.kGray + 2, ROOT.kOrange + 1, ROOT.kSpring + 5]
max_list = [4., 4., 20., 3., 3.]
plot_type_dict = {
    _type: {'label': _label, 'color': _color, 'max': _max}
    for (_type, _label, _color, _max) in zip(type_list, label_list, color_list, max_list)
}
# marker_style = 20
 
 
# condition db object (payload) checkers
class ConditionCheckerBase(ABC):
    """Abstract base class describing interfaces to make plots from condition db."""
 
    def __init__(self, name, objType, tfile, rundir="", use_hist=False):
        """
        """
        super().__init__()
        
        self.namename = name
        
        self._objType_objType = objType
        
        self.dbObjdbObj = Belle2.PyDBObj(self.namename, self.objTypeobjType.Class())
        
        self.eventMetaDataeventMetaData = Belle2.PyStoreObj("EventMetaData")
        
        self.tfiletfile = tfile
        
        self.rundirrundir = rundir  # empty means skipping self.hists
        if self.rundirrundir != "":
            self.tfiletfile.cd()
            self.tfiletfile.mkdir(self.rundirrundir)
        
        self.graphsgraphs = {}
        
        self.histshists = {}
        
        self.hist_title_suffixhist_title_suffix = ""
        
        self.runstartrunstart = 999999  # a big number that will never be used
        
        self.runendrunend = -1
        
        self.expstartexpstart = 999999
        
        self.use_histuse_hist = use_hist
 
        self.define_graphsdefine_graphs()
 
    @property
    def objType(self):
        """
        DBObj type (read only)
        """
        return self._objType_objType
 
    @property
    def run(self):
        """
        Run number
        """
        return self.eventMetaDataeventMetaData.getRun()
 
    @property
    def exp(self):
        """
        Experiment number
        """
        return self.eventMetaDataeventMetaData.getExperiment()
 
    def beginRun(self):
        """
        Call functions at beginning of a run
        """
        self.define_histsdefine_hists()
        self.fill_plotsfill_plots()
 
    def define_graphs(self, ytitle=""):
        """
        Method to define TGraph
        Parameters:
          ytitle (str): Label for TGraph y-axis
        """
        self.tfiletfile.cd()
        self.graphsgraphs.update(get_sensor_graphs(ytitle))
 
    def define_hists(self, name=None, title=None, ztitle=None, **kwargs):
        """
        Method to define TH2
        Parameters:
          name (str): name for TH2, to which sensor name will be attached
          title (str): title for TH2
          ztitle (str): title for z-axis (color bar)
          kwargs: additional arguments
        """
        if self.rundirrundir:
            self.tfiletfile.cd(self.rundirrundir)
            self.histshists.update(get_sensor_maps(name, title, ztitle, self.runrun, **kwargs))
 
    @abstractmethod
    def get_db_content(self):
        """
        Abstract method to get content of a payload
        Should return a Dictionary with sensorID.getID() as key and relaated calibration results as value
        """
 
    @abstractmethod
    def get_graph_value(self, sensor_db_content):
        """
        Abstract method to get a value for each TGraph
        Parameters:
          sensor_db_content (Any): Calibration results of a module
        """
 
    def get_graph_value_from_hist(self, h2=None):
        """
        Method to get a value for each TGraph
        Parameters:
          h2 (TH2): If not none, get value from h2
        """
        return None
 
    def set_hist_content(self, h2, sensor_db_content):
        """
        Method to set TH2 bins
        Parameters:
          h2 (TH2): TH2F object for handling values of a pixel matrix
          sensor_db_content (Any): Calibration results of a module
        """
        pass
 
    def fill_plots(self):
        """
        Method to fill plot objects
        """
        if self.exp < self.expstart:
            self.expstart = self.exp
        if self.run < self.runstart:
            self.runstart = self.run
        if self.run > self.runend:
            self.runend = self.run
 
        db_content = self.get_db_content()
        values_dict = {}
        pre_values_dict = {}
        for sensorID in sensorID_list:
            sensor_db_content = db_content[sensorID.getID()]
            if self.graphs:
                if not self.use_hist:
                    values_dict[sensorID.getID()] = self.get_graph_value(sensor_db_content)
                gr = self.graphs[sensorID.getID()]
                pre_values_dict[sensorID.getID()] = gr.GetPointY(gr.GetN() - 1)
            # Saving graph points only for different values (sensor-wise)
                # value = self.get_graph_value(sensor_db_content)
                # pre_value = gr.GetPointY(gr.GetN()-1)
                # if value != pre_value:
                #     gr.SetPoint(gr.GetN(), self.run, value)
            # Saving masked map
            if self.rundir != "" and self.hists:
                h2 = self.hists[sensorID.getID()]
                self.set_hist_content(h2, sensor_db_content)
                # Update title with total count
                h2.SetTitle(h2.GetTitle() + self.hist_title_suffix)
                self.tfile.cd(self.rundir)
                h2.Write()
                if self.use_hist:
                    values_dict[sensorID.getID()] = self.get_graph_value_from_hist(h2)
        # Saving graph points only for different conditions
        if values_dict != pre_values_dict:
            for sensorID in sensorID_list:
                gr = self.graphs[sensorID.getID()]
                gr.SetPoint(gr.GetN(), self.run, values_dict[sensorID.getID()])
 
    def draw_plots(self, canvas=None, cname="", ymin=0., ymax=None, logy=False):
        """
        Method to draw plots on a TCanvas
        Parameters:
          canvas (TCanvas): ROOT TCanvas for plotting
          canme (str): Name of the canvas
          ymin (float): Minimum value of y-axis for plotting
          ymax (float): Maximum of y-axis for plotting
          logy (bool): Flag to use log scale for y-axis
        """
        if not canvas:
            return
        else:
            canvas.Clear()
            canvas.SetWindowSize(1000, 400)
            canvas.SetLeftMargin(0.09)
            canvas.SetRightMargin(0.05)
        self.tfiletfile.cd()
        for i, sensorID in enumerate(sensorID_list):
            sensor_id = sensorID.getID()
            if i == 0:
                if ymax is None:
                    ymax = np.array([np.array(gr.GetY()) for gr in list(self.graphsgraphs.values())
                                     if isinstance(gr, ROOT.TGraph)]).max()
                self.graphsgraphs[sensor_id].SetMaximum(ymax)
                self.graphsgraphs[sensor_id].SetMinimum(ymin)
                self.graphsgraphs[sensor_id].Draw("AP")
            else:
                self.graphsgraphs[sensor_id].Draw("P")
        if self.graphsgraphs["TLegends"]:
            for leg in self.graphsgraphs["TLegends"]:
                leg.Draw()
        self.save_canvassave_canvas(canvas, cname, logy=logy)
 
    def save_canvas(self, canvas, cname, logy=False):
        """
        Save TCanvas to png/pdf format and do not write it to the ROOT file by default
        Parameters:
          canvas (TCanvas): ROOT TCanvas for plotting
          canme (str): Name of the canvas
          logy (bool): Flag to use log scale for y-axis
        """
        if cname:
            canvas.SetName(cname)
        exp_run = f"e{self.expstart:05}_r{self.runstart:04}-{self.runend:04}"
        # Draw Belle II label
        latex_r.DrawLatex(0.95, 0.92, "Belle II Experiment: " + exp_run.replace("_", " "))
        # Print and write TCanvas
        if logy:
            canvas.SetLogy(1)
            canvas.Update()
            canvas.Modified()
            canvas.Print(f"{exp_run}_{cname}_vs_run_logy.png")
            canvas.Print(f"{exp_run}_{cname}_vs_run_logy.pdf")
        else:
            canvas.SetLogy(0)
            canvas.Print(f"{exp_run}_{cname}_vs_run.png")
            canvas.Print(f"{exp_run}_{cname}_vs_run.pdf")
        self.tfiletfile.cd()
 
 
class PXDOccupancyInfoChecker(ConditionCheckerBase):
    """
    Checker for PXDOccupancyInfoPar
    """
 
    def __init__(self, name, tfile, rundir=""):
        """
        """
        super().__init__(name, Belle2.PXDOccupancyInfoPar, tfile, "")
 
    def define_graphs(self):
        """
        Method to define TGraph
        """
        super().define_graphs(ytitle="Occupancy (With Mask) [%]")
 
    def get_db_content(self):
        content_dic = {}
        for sensorID in sensorID_list:
            numID = sensorID.getID()
            raw_occ = self.dbObjdbObj.getOccupancy(numID)
            # The default value is -1. It seems 0 will not be updated into the payload.
            content_dic[numID] = raw_occ if raw_occ >= 0 else 0
 
        return content_dic
 
    def get_graph_value(self, sensor_db_content):
        return sensor_db_content * 100
 
    def draw_plots(self, canvas=None, **kwargs):
        """
        Method to draw plots on a TCanvas
        """
        # We don't use raw occupanncy. They will be corrected after takig out dead pixels
        pass
        # super().draw_plots(canvas=canvas, cname="OccupancyWithMask", ymin=0., ymax=plot_type_dict["occ_masked"]["max"])
 
 
class PXDMaskedPixelsChecker(ConditionCheckerBase):
    """
    Checker for PXDMaskedPixelPar
    """
 
    def __init__(self, name, tfile, rundir="maps"):
        """
        """
        super().__init__(name, Belle2.PXDMaskedPixelPar, tfile, rundir)
 
    def define_graphs(self):
        """
        Method to define TGraph
        """
        super().define_graphs(ytitle="Hot pixels [%]")
 
    def define_hists(self):
        """
        Method to define TH2
        """
        super().define_hists(name="MaskedPixels", title="Masked Pixels", ztitle="isMasked")
 
    def get_db_content(self):
        return self.dbObjdbObj.getMaskedPixelMap()
 
    def get_graph_value(self, sensor_db_content):
        hotcount = len(sensor_db_content)
        
        self.hist_title_suffixhist_title_suffixhist_title_suffix = f" ({hotcount} pixels)"
        return hotcount * 100. / nPixels
 
    def set_hist_content(self, h2, sensor_db_content):
        # loop over all masked pixels
        for pixelID in sensor_db_content:
            uCell = int(pixelID / nVCells)
            vCell = pixelID % nVCells
            h2.SetBinContent(int(uCell + 1), int(vCell + 1), 1)
 
    def draw_plots(self, canvas=None, cname="PXDHotPixel", ymin=0., ymax=plot_type_dict["hot"]["max"], **kwargs):
        """
        Method to draw plots on a TCanvas
        """
        super().draw_plots(canvas=canvas, cname=cname, ymin=ymin, ymax=ymax, **kwargs)
 
 
class PXDDeadPixelsChecker(ConditionCheckerBase):
    """
    Checker for PXDDeadPixelPar
    """
 
    def __init__(self, name, tfile, rundir="maps", use_hist=True):
        """
        """
        super().__init__(name, Belle2.PXDDeadPixelPar, tfile, rundir)
 
    def define_graphs(self):
        """
        Method to define TGraph
        """
        super().define_graphs(ytitle="Dead pixels [%]")
 
    def define_hists(self):
        """
        Method to define TH2
        """
        super().define_hists(name="DeadPixels", title="Dead Pixels", ztitle="isDead")
 
    def get_db_content(self):
        deadsensormap = self.dbObjdbObj.getDeadSensorMap()
        deaddrainmap = self.dbObjdbObj.getDeadDrainMap()
        deadrowmap = self.dbObjdbObj.getDeadRowMap()
        deadsinglesmap = self.dbObjdbObj.getDeadSinglePixelMap()
 
        content_dic = {}
        for sensorID in sensorID_list:
            numID = sensorID.getID()
            content_dic[numID] = {}
            if numID in deadsensormap:
                content_dic[numID]["deadsensor"] = True
            else:
                content_dic[numID]["deadsensor"] = False
                content_dic[numID]["deaddrains"] = deaddrainmap[numID]
                content_dic[numID]["deadrows"] = deadrowmap[numID]
                content_dic[numID]["deadsingles"] = deadsinglesmap[numID]
        return content_dic
 
    def get_graph_value(self, sensor_db_content):
        deadcount = 0
        if sensor_db_content["deadsensor"]:
            deadcount = nPixels
        else:
            n_deaddrains = len(sensor_db_content["deaddrains"])
            n_deadrows = len(sensor_db_content["deadrows"])
            if n_deaddrains == 0 or n_deadrows == 0:
                # Every dead drain counts for 192 dead pixels
                deadcount = n_deaddrains * 192
                # Every dead row counts for 250 dead pixels
                # This can lead to double counting of dead pixel from dead drains
                # The double counting can be avoided by using TH2.Integral().
                deadcount += n_deadrows * 250
                # Every dead single pixels
                deadcount += len(sensor_db_content["deadsingles"])
            else:  # Using a histogram to avoid double counting
                # Just create a temporary TH2
                h2 = list(get_sensor_maps(sensorID_list=sensorID_list[0:1]).values())[0]
                self.set_hist_contentset_hist_contentset_hist_content(h2, sensor_db_content)
                deadcount = h2.Integral()
        
        self.hist_title_suffixhist_title_suffixhist_title_suffix = f" ({deadcount} pixels)"
        return min(deadcount, nPixels) * 100. / nPixels
 
    def get_graph_value_from_hist(self, h2):
        return h2.Integral() * 100. / nPixels
 
    def set_hist_content(self, h2, sensor_db_content):
        # loop over all dead pixels
        if sensor_db_content["deadsensor"]:
            ones = np.ones(nPixels)
            h2.SetContent(ones)
        else:
            for drainID in sensor_db_content["deaddrains"]:
                for iGate in range(192):
                    uCell = drainID / 4
                    vCell = drainID % 4 + iGate * 4
                    h2.SetBinContent(int(uCell + 1), int(vCell + 1), 1)
 
            for vCell in sensor_db_content["deadrows"]:
                for uCell in range(nUCells):
                    h2.SetBinContent(int(uCell + 1), int(vCell + 1), 1)
 
            for pixelID in sensor_db_content["deadsingles"]:
                uCell = int(pixelID / nVCells)
                vCell = pixelID % nVCells
                h2.SetBinContent(int(uCell + 1), int(vCell + 1), 1)
 
    def draw_plots(self, canvas=None, cname="PXDDeadPixel", ymin=0., ymax=plot_type_dict["dead"]["max"], **kwargs):
        """
        Method to draw plots on a TCanvas
        """
        super().draw_plots(canvas=canvas, cname=cname, ymin=ymin, ymax=ymax, **kwargs)
 
 
class PXDGainMapChecker(ConditionCheckerBase):
    """
    Checker for PXDGainMapPar
    """
 
    def __init__(self, name, tfile, rundir="maps"):
        """
        """
        super().__init__(name, Belle2.PXDGainMapPar, tfile, rundir)
 
    def define_graphs(self):
        """
        Method to define TGraph
        """
        super().define_graphs(ytitle="Gain / MC default")
 
    def define_hists(self):
        """
        Method to define TH2
        """
        nU = self.dbObjdbObj.getBinsU()
        nV = self.dbObjdbObj.getBinsV()
        super().define_hists(name="GainMap", title="Gain / MC default", ztitle="Relative gain", nUCells=nU, nVCells=nV)
 
    def get_db_content(self):
        gainMap = self.dbObjdbObj.getCalibrationMap()
        content_dic = {}
        for sensorID in sensorID_list:
            numID = sensorID.getID()
            content_dic[numID] = np.array(list(gainMap[numID]))
        return content_dic
 
    def get_graph_value(self, sensor_db_content):
        """
        sensor_db_content (np.array): Array of gain factors of a module
        """
        return sensor_db_content.mean()
 
    def set_hist_content(self, h2, sensor_db_content):
        array2hist(sensor_db_content.reshape(h2.GetNbinsX(), h2.GetNbinsY()), h2)
 
    def draw_plots(self, canvas=None, cname="PXDGain", ymin=0.5, ymax=2.5, **kwargs):
        """
        Method to draw plots on a TCanvas
        """
        super().draw_plots(canvas=canvas, cname=cname, ymin=ymin, ymax=ymax, **kwargs)