SVDLocalCalibrationsCheckModule.cc

/**************************************************************************
 * basf2 (Belle II Analysis Software Framework)                           *
 * Author: The Belle II Collaboration                                     *
 *                                                                        *
 * See git log for contributors and copyright holders.                    *
 * This file is licensed under LGPL-3.0, see LICENSE.md.                  *
 **************************************************************************/
 
#include <svd/modules/svdCalibration/SVDLocalCalibrationsCheckModule.h>
#include <vxd/geometry/GeoCache.h>
#include <svd/geometry/SensorInfo.h>
 
#include <TCanvas.h>
#include <TLine.h>
#include <TPaveText.h>
#include <TStyle.h>
#include <TText.h>
 
using namespace Belle2;
 
//-----------------------------------------------------------------
//                 Register the Module
//-----------------------------------------------------------------
REG_MODULE(SVDLocalCalibrationsCheck);
 
//-----------------------------------------------------------------
//                 Implementation
//-----------------------------------------------------------------
 
SVDLocalCalibrationsCheckModule::SVDLocalCalibrationsCheckModule() : Module()
{
  // Set module properties
  setDescription("Module to produce a list of histograms showing the uploaded calibration constants");
 
  // Parameter definitions
  addParam("outputPdfName", m_outputPdfName, "output pdf filename", std::string("SVDLocalCalibrationsCheck.pdf"));
  addParam("referenceID", m_idFileNameREF, "ID of REFERENCE xml file.",
           std::string("refID"));
  addParam("checkID", m_idFileNameCHECK, "ID of CHECK xml file.",
           std::string("checkID"));
  addParam("reference_root", m_rootFileNameREF, "Name of REFERENCE root file.",
           std::string("SVDLocalCalibrationsMonitor_ref.root"));
  addParam("check_root", m_rootFileNameCHECK, "Name of CHECK root file.",
           std::string("SVDLocalCalibrationsMonitor_check.root"));
  addParam("plotGoodAPVs", m_plotGoodAPVs, "If true draw 1D plots also for good APVs", bool(false));
 
  addParam("cutN_outliers", m_cutN_out, "Max number of outliers allowed", int(5));
  addParam("cutNoise_average", m_cutNoise_ave, "Max deviation of average noise per APV, in ADC", float(0.1));
  addParam("cutNoise_outliers", m_cutNoise_out, "Max deviation of single strip, in ADC", float(2));
  addParam("cutCalPeakADC_average", m_cutCalpeakADC_ave, "Max deviation of average CalPeakADC per APV, in ADC", float(4));
  addParam("cutCalPeakADC_outliers", m_cutCalpeakADC_out, "Max deviation of single strip, in ADC", float(10));
  addParam("cutPedestal_average", m_cutPedestal_ave, "Max deviation of average pedestal per APV, in ADC", float(4));
  addParam("cutPedestal_outliers", m_cutPedestal_out, "Max deviation of single strip, in ADC", float(10));
 
}
 
void SVDLocalCalibrationsCheckModule::printConfiguration()
{
  B2INFO("SVD Local Calibration Check Configuration");
  B2INFO("-----------------------------------------");
  B2INFO("");
  B2INFO("- input files:");
  B2INFO("        reference: " << m_idFileNameREF);
  B2INFO("            check: " << m_idFileNameCHECK);
  B2INFO("- output file:");
  B2INFO("         output pdf: " << m_outputPdfName);
  B2INFO("");
  B2INFO("- analysis parameters:");
  B2INFO("           outliers (Noise, Pedestal, CalPeakADC)");
  B2INFO("              max allowed outliers = " << m_cutN_out);
  B2INFO("           Noise");
  B2INFO("              max difference on the APV averages = " << m_cutNoise_ave << " ADC");
  B2INFO("              max to mark a strip as outlier = " << m_cutNoise_out << " ADC");
  B2INFO("           CalPeakADC");
  B2INFO("              max difference on the APV averages = " << m_cutCalpeakADC_ave << " ADC");
  B2INFO("              max to mark a strip as outlier = " << m_cutCalpeakADC_out << " ADC");
  B2INFO("           Pedestal");
  B2INFO("              max difference on the APV averages = " << m_cutPedestal_ave << " ADC");
  B2INFO("              max to mark a strip as outlier = " << m_cutPedestal_out << " ADC");
  B2INFO("--------------------------------------------------------------");
  B2INFO("");
}
 
void SVDLocalCalibrationsCheckModule::beginRun()
{
 
  printConfiguration();
 
  gStyle->SetOptStat(0);
  gStyle->SetLegendBorderSize(0);
  gStyle->SetTextFont(42);
 
  // read REFERENCE root file
  m_rootFilePtrREF = new TFile(m_rootFileNameREF.c_str(), "READ");
 
  //  m_rootFilePtrREF->Print();
 
  //REF tree initialization
  m_treeREF = (TTree*)m_rootFilePtrREF->Get("calibLocalDetailed");
  m_treeREF->SetBranchAddress("run", &m_runREF, &b_runREF);
  m_treeREF->SetBranchAddress("layer", &m_layerREF, &b_layerREF);
  m_treeREF->SetBranchAddress("ladder", &m_ladderREF, &b_ladderREF);
  m_treeREF->SetBranchAddress("sensor", &m_sensorREF, &b_sensorREF);
  m_treeREF->SetBranchAddress("side", &m_sideREF, &b_sideREF);
  m_treeREF->SetBranchAddress("strip", &m_stripREF, &b_stripREF);
  m_treeREF->SetBranchAddress("mask", &m_maskREF, &b_maskREF);
  m_treeREF->SetBranchAddress("noise", &m_noiseREF, &b_noiseREF);
  m_treeREF->SetBranchAddress("noiseEl", &m_noiseElREF, &b_noiseElREF);
  m_treeREF->SetBranchAddress("gain", &m_gainREF,  &b_gainREF);
  m_treeREF->SetBranchAddress("pedestal", &m_pedestalREF, &b_pedestalREF);
  m_treeREF->SetBranchAddress("calPeakADC", &m_calPeakADCREF, &b_calPeakADCREF);
  m_treeREF->SetBranchAddress("calPeakTime", &m_calPeakTimeREF, &b_calPeakTimeREF);
  m_treeREF->SetBranchAddress("pulseWidth", &m_pulseWidthREF, &b_pulseWidthREF);
 
  // read CHECK root file
  m_rootFilePtrCHECK = new TFile(m_rootFileNameCHECK.c_str(), "READ");
  //  m_rootFilePtrCHECK->Print();
 
  //CHECK tree initialization
  m_treeCHECK = (TTree*)m_rootFilePtrCHECK->Get("calibLocalDetailed");
  m_treeCHECK->SetBranchAddress("run", &m_runCHECK, &b_runCHECK);
  m_treeCHECK->SetBranchAddress("layer", &m_layerCHECK, &b_layerCHECK);
  m_treeCHECK->SetBranchAddress("ladder", &m_ladderCHECK, &b_ladderCHECK);
  m_treeCHECK->SetBranchAddress("sensor", &m_sensorCHECK, &b_sensorCHECK);
  m_treeCHECK->SetBranchAddress("side", &m_sideCHECK, &b_sideCHECK);
  m_treeCHECK->SetBranchAddress("strip", &m_stripCHECK, &b_stripCHECK);
  m_treeCHECK->SetBranchAddress("mask", &m_maskCHECK, &b_maskCHECK);
  m_treeCHECK->SetBranchAddress("noise", &m_noiseCHECK, &b_noiseCHECK);
  m_treeCHECK->SetBranchAddress("noiseEl", &m_noiseElCHECK, &b_noiseElCHECK);
  m_treeCHECK->SetBranchAddress("gain", &m_gainCHECK,  &b_gainCHECK);
  m_treeCHECK->SetBranchAddress("pedestal", &m_pedestalCHECK, &b_pedestalCHECK);
  m_treeCHECK->SetBranchAddress("calPeakTime", &m_calPeakTimeCHECK, &b_calPeakTimeCHECK);
  m_treeCHECK->SetBranchAddress("calPeakADC", &m_calPeakADCCHECK, &b_calPeakADCCHECK);
  m_treeCHECK->SetBranchAddress("pulseWidth", &m_pulseWidthCHECK, &b_pulseWidthCHECK);
 

  m_h2MaskREF = (SVDHistograms<TH2F>*)m_rootFilePtrREF->Get("expert/h2Mask");
  m_h2MaskCHECK = (SVDHistograms<TH2F>*)m_rootFilePtrCHECK->Get("expert/h2Mask");
 
  TH1F template_mask("maskDIFF_L@layerL@ladderS@sensor@view@apv",
                     "Mask Deviation Distribution in @layer.@ladder.@sensor @view/@side",
                     //                      200, -1, 1);
                     200, -5, 5);
  //  template_mask.GetXaxis()->SetTitle("( ref - check ) / ref");
  template_mask.GetXaxis()->SetTitle("ref - check");
  m_hMaskDIFF = new SVDAPVHistograms<TH1F>(template_mask);
  setAPVHistoStyles(m_hMaskDIFF);
  m_hMaskSummary = new SVDSummaryPlots("maskSummary@view", "REF - CHECK Number of Masked strips @view/@side Side");
  m_hMaskSummaryCHECK = new SVDSummaryPlots("maskCHECKSummary@view", "CHECK Number Masked Strips @view/@side Side");

  m_h2NoiseREF = (SVDHistograms<TH2F>*)m_rootFilePtrREF->Get("expert/h2Noise");
  m_h2NoiseCHECK = (SVDHistograms<TH2F>*)m_rootFilePtrCHECK->Get("expert/h2Noise");
 
  TH1F template_noise("noiseDIFF_L@layerL@ladderS@sensor@view@apv",
                      "Noise Deviation Distribution in @layer.@ladder.@sensor @view/@side",
                      //                      200, -1, 1);
                      200, -5, 5);
  //  template_noise.GetXaxis()->SetTitle("( ref - check ) / ref");
  template_noise.GetXaxis()->SetTitle("ref - check (ADC)");
  m_hNoiseDIFF = new SVDAPVHistograms<TH1F>(template_noise);
  setAPVHistoStyles(m_hNoiseDIFF);
  m_hNoiseSummary = new SVDSummaryPlots("noiseSummary@view", "Number of problematic APV chips due to Noise for @view/@side Side");
 
 
 

  m_h2CalpeakTimeREF = (SVDHistograms<TH2F>*)m_rootFilePtrREF->Get("expert/h2CalPeakTime");
  m_h2CalpeakTimeCHECK = (SVDHistograms<TH2F>*)m_rootFilePtrCHECK->Get("expert/h2CalPeakTime");
 
  TH1F template_calpeakTime("calpeakTimeDIFF_L@layerL@ladderS@sensor@view@apv",
                            //         "CalpeakTime Deviation Distribution in @layer.@ladder.@sensor @view/@side APV @apv",
                            "CalPeakTime Deviation Distribution in @layer.@ladder.@sensor @view/@side",
                            500, -0.5, 0.5);
  template_calpeakTime.GetXaxis()->SetTitle("( ref - check ) / ref");
  m_hCalpeakTimeDIFF = new SVDAPVHistograms<TH1F>(template_calpeakTime);
  setAPVHistoStyles(m_hCalpeakTimeDIFF);
  m_hCalpeakTimeSummary = new SVDSummaryPlots("calPeakTimeSummary@view",
                                              "Number of problematic APV chips due to CalPeakTime for @view/@side Side for @view/@side Side");

  m_h2CalpeakADCREF = (SVDHistograms<TH2F>*)m_rootFilePtrREF->Get("expert/h2CalPeakADC");
  m_h2CalpeakADCCHECK = (SVDHistograms<TH2F>*)m_rootFilePtrCHECK->Get("expert/h2CalPeakADC");
 
  TH1F template_calpeakADC("calpeakADCDIFF_L@layerL@ladderS@sensor@view@apv",
                           //         "CalpeakADC Deviation Distribution in @layer.@ladder.@sensor @view/@side APV @apv",
                           "CalPeakADC Deviation Distribution in @layer.@ladder.@sensor @view/@side",
                           400, -20, 20);
  template_calpeakADC.GetXaxis()->SetTitle("ref - check (ADC)");
  m_hCalpeakADCDIFF = new SVDAPVHistograms<TH1F>(template_calpeakADC);
  setAPVHistoStyles(m_hCalpeakADCDIFF);
  m_hCalpeakADCSummary = new SVDSummaryPlots("calPeakADCSummary@view",
                                             "Number of problematic APV chips due to CalPeakADC for @view/@side Side");
 

  m_h2PedestalREF = (SVDHistograms<TH2F>*)m_rootFilePtrREF->Get("expert/h2Pedestal");
  m_h2PedestalCHECK = (SVDHistograms<TH2F>*)m_rootFilePtrCHECK->Get("expert/h2Pedestal");
 
  TH1F template_pedestal("pedestalDIFF_L@layerL@ladderS@sensor@view@apv",
                         "Pedestal Deviation Distribution in @layer.@ladder.@sensor @view/@side",
                         //                         100, -0.5, 0.5);
                         100, -15, 15);
  //  template_pedestal.GetXaxis()->SetTitle("( ref - check ) / ref");
  template_pedestal.GetXaxis()->SetTitle("(ref - check)  (ADC)");
  m_hPedestalDIFF = new SVDAPVHistograms<TH1F>(template_pedestal);
  setAPVHistoStyles(m_hPedestalDIFF);
  m_hPedestalSummary = new SVDSummaryPlots("pedestalSummary@view",
                                           "Number of problematic APV chips due to Pedestal for @view/@side Side");
 
  createLegends();
}
 
void SVDLocalCalibrationsCheckModule::event()
{
  printFirstPage();
 
  Long64_t nentries = m_treeREF->GetEntriesFast();
 
  for (Long64_t jentry = 0; jentry < nentries; jentry++) {
    m_treeREF->GetEntry(jentry);
    m_treeCHECK->GetEntry(jentry);
    VxdID theVxdID(m_layerREF, m_ladderREF, m_sensorREF);
    float diff = 0;
 
 
    diff = (m_maskREF - m_maskCHECK);// / m_maskREF;
    m_hMaskDIFF->fill(theVxdID, (int)m_sideREF, (int)m_stripREF / 128, diff);
    if (m_sideREF == 1) {
      m_nMaskedUREF += m_maskREF;
      m_nMaskedUCHECK += m_maskCHECK;
    } else {
      m_nMaskedVREF += m_maskREF;
      m_nMaskedVCHECK += m_maskCHECK;
    }
    m_hMaskSummaryCHECK->fill(theVxdID, (int)m_sideREF, (float)m_maskCHECK);
 
    diff = (m_noiseREF - m_noiseCHECK);// / m_noiseREF;
    m_hNoiseDIFF->fill(theVxdID, (int)m_sideREF, (int)m_stripREF / 128, diff);
 
    diff = (m_calPeakTimeREF - m_calPeakTimeCHECK) / m_calPeakTimeREF;
    m_hCalpeakTimeDIFF->fill(theVxdID, (int)m_sideREF, (int)m_stripREF / 128, diff);
 
    diff = (m_calPeakADCREF - m_calPeakADCCHECK);// / m_calPeakADCREF;
    m_hCalpeakADCDIFF->fill(theVxdID, (int)m_sideREF, (int)m_stripREF / 128, diff);
 
    diff = (m_pedestalREF - m_pedestalCHECK);// / m_pedestalREF;
    m_hPedestalDIFF->fill(theVxdID, (int)m_sideREF, (int)m_stripREF / 128, diff);
  }
 
 
  //call for a geometry instance
  VXD::GeoCache& aGeometry = VXD::GeoCache::getInstance();
  std::set<Belle2::VxdID> svdLayers = aGeometry.getLayers(VXD::SensorInfoBase::SVD);
  std::set<Belle2::VxdID>::iterator itSvdLayers = svdLayers.begin();
 
  while ((itSvdLayers != svdLayers.end()) && (itSvdLayers->getLayerNumber() != 7)) { //loop on Layers
 
    bool isL3 = false;
 
    int layer = itSvdLayers->getLayerNumber();
    printLayerPage(layer);
 
    if (layer == 3)
      isL3 = true;
 
    std::set<Belle2::VxdID> svdLadders = aGeometry.getLadders(*itSvdLayers);
    std::set<Belle2::VxdID>::iterator itSvdLadders = svdLadders.begin();
 
    while (itSvdLadders != svdLadders.end()) { //loop on Ladders
 
      std::set<Belle2::VxdID> svdSensors = aGeometry.getSensors(*itSvdLadders);
      std::set<Belle2::VxdID>::iterator itSvdSensors = svdSensors.begin();
 
      while (itSvdSensors != svdSensors.end()) { //loop on sensors
        B2DEBUG(1, "    svd sensor info " << *itSvdSensors);
 
 
        int ladder =  itSvdSensors->getLadderNumber();
        int sensor = itSvdSensors->getSensorNumber();
        Belle2::VxdID theVxdID(layer, ladder, sensor);
        const SVD::SensorInfo* currentSensorInfo = dynamic_cast<const SVD::SensorInfo*>(&VXD::GeoCache::getInstance().getSensorInfo(
                                                     theVxdID));
 
        TList* listEmpty = new TList;
 
        //noise
        TList* listNoiseUBAD = new TList;
        TList* listNoiseUGOOD = new TList;
        TList* listNoiseVBAD = new TList;
        TList* listNoiseVGOOD = new TList;
 
 
        //calpeak
        TList* listCalpeakADCUBAD = new TList;
        TList* listCalpeakADCUGOOD = new TList;
        TList* listCalpeakADCVBAD = new TList;
        TList* listCalpeakADCVGOOD = new TList;
 
        //calpeak
        TList* listCalpeakTimeUGOOD = new TList;
        TList* listCalpeakTimeVGOOD = new TList;
 
        //pedestal
        TList* listPedestalUBAD = new TList;
        TList* listPedestalUGOOD = new TList;
        TList* listPedestalVBAD = new TList;
        TList* listPedestalVGOOD = new TList;
 
        bool needPlot = false;
        for (int side = 0; side < 2; side++) {
 
          int Ncells = currentSensorInfo->getUCells();
          if (side == 0)
            Ncells = currentSensorInfo->getVCells();
 
          int Napv = Ncells / 128;
 
          for (int m_APV = 0; m_APV < Napv; m_APV++) {
 
            int problem = 0;
 
            //mask analysis
            TH1F* hMask = m_hMaskDIFF->getHistogram(theVxdID, side, m_APV);
            m_hMaskSummary->fill(theVxdID, side, hMask->GetMean() * 128);
 
            //noise analysis
            TH1F* hNoise = m_hNoiseDIFF->getHistogram(theVxdID, side, m_APV);
            problem = hasAnyProblem(hNoise, m_cutNoise_ave, m_cutNoise_out);
            if (problem)   {
              needPlot = true;
              B2INFO("WARNING, ONE APV has Noise problems in: L" << layer << "L" << ladder << "S" << sensor << " side = " << side <<
                     ", APV number = " << m_APV << ", problem ID = " << problem);
              m_hNoiseSummary->fill(theVxdID, side, 1);
              if (side == 0)
                listNoiseVBAD->Add(hNoise);
              else
                listNoiseUBAD->Add(hNoise);
            } else {
              if (side == 0)
                listNoiseVGOOD->Add(hNoise);
              else
                listNoiseUGOOD->Add(hNoise);
            }
 
 
 
            //calpeak analysis
            TH1F* hCalpeakADC = m_hCalpeakADCDIFF->getHistogram(theVxdID, side, m_APV);
            problem = hasAnyProblem(hCalpeakADC, m_cutCalpeakADC_ave, m_cutCalpeakADC_out);
            if (problem)   {
              needPlot = true;
              B2INFO("WARNING, ONE APV has CalpeakADC problems in: L" << layer << "L" << ladder << "S" << sensor << " side = " << side <<
                     ", APV number = " << m_APV << " problem ID = " << problem);
              m_hCalpeakADCSummary->fill(theVxdID, side, 1);
              if (side == 0)
                listCalpeakADCVBAD->Add(hCalpeakADC);
              else
                listCalpeakADCUBAD->Add(hCalpeakADC);
            } else {
              if (side == 0)
                listCalpeakADCVGOOD->Add(hCalpeakADC);
              else
                listCalpeakADCUGOOD->Add(hCalpeakADC);
            }
 
            //calpeak plot
            TH1F* hCalpeakTime = m_hCalpeakTimeDIFF->getHistogram(theVxdID, side, m_APV);
            if (side == 0)
              listCalpeakTimeVGOOD->Add(hCalpeakTime);
            else
              listCalpeakTimeUGOOD->Add(hCalpeakTime);
 
 
            //pedestal analysis
            TH1F* hPedestal = m_hPedestalDIFF->getHistogram(theVxdID, side, m_APV);
            problem = hasAnyProblem(hPedestal, m_cutPedestal_ave, m_cutPedestal_out);
            if (problem)   {
              needPlot = true;
              B2INFO("WARNING, ONE APV has Pedestal problems in: L" << layer << "L" << ladder << "S" << sensor << " side = " << side <<
                     ", APV number = " << m_APV << " problem ID = " << problem);
              m_hPedestalSummary->fill(theVxdID, side, 1);
              if (side == 0)
                listPedestalVBAD->Add(hPedestal);
              else
                listPedestalUBAD->Add(hPedestal);
            } else {
              if (side == 0)
                listPedestalVGOOD->Add(hPedestal);
              else
                listPedestalUGOOD->Add(hPedestal);
            }
 
 
 
          }
        }
        if (needPlot) {
          printPage(theVxdID, listNoiseUBAD, listNoiseVBAD, listNoiseUGOOD, listNoiseVGOOD, "Noise", isL3);
          printPage(theVxdID, listCalpeakADCUBAD, listCalpeakADCVBAD, listCalpeakADCUGOOD, listCalpeakADCVGOOD, "CalpeakADC", isL3);
          printPage(theVxdID, listEmpty, listEmpty, listCalpeakTimeUGOOD, listCalpeakTimeVGOOD, "CalpeakTime", isL3);
          printPage(theVxdID, listPedestalUBAD, listPedestalVBAD, listPedestalUGOOD, listPedestalVGOOD, "Pedestal", isL3);
        }
        ++itSvdSensors;
      }
      ++itSvdLadders;
    }
    ++itSvdLayers;
  }
 
  printAPVSummaryPages();
  printMaskedSummaryPages();
  printLastPage();
 
}
 
void SVDLocalCalibrationsCheckModule::printFirstPage()
{
 
  TCanvas* empty = new TCanvas();
  TString pdf_open = TString(m_outputPdfName) + "[";
  empty->Print(pdf_open);
 
  TCanvas* first = new TCanvas("open_pag1", "test first page");
  first->cd();
  TPaveText* pt_title = new TPaveText(.05, .9, .95, 1, "blNDC");
  char name[50];
  sprintf(name, "Local Calibration Check Results");
  pt_title->AddText(name);
  pt_title->SetTextFont(42);
  pt_title->SetTextColor(kBlack);
  pt_title->SetShadowColor(0);
  pt_title->SetFillColor(10);
  pt_title->SetBorderSize(0);
  pt_title->SetTextSize(0.08);
  pt_title->Draw();
 
  TPaveText* pt_input_title = new TPaveText(.05, .8, .95, .85);
  TPaveText* pt_input = new TPaveText(.05, .72, .8, .8);
  char input[150];
  sprintf(input, "%s", "input files");
  pt_input_title->AddText(input);
  pt_input_title->SetShadowColor(0);
  pt_input_title->SetBorderSize(0);
  pt_input_title->SetTextSize(0.03);
  if (m_idFileNameREF == "refID")
    sprintf(input, "reference rootfile = %s",  m_rootFileNameREF.c_str());
  else
    sprintf(input, " reference ID = %s",  m_idFileNameREF.c_str());
  pt_input->AddText(input);
  ((TText*)pt_input->GetListOfLines()->Last())->SetTextColor(kRed);
  if (m_idFileNameCHECK == "checkID")
    sprintf(input, "calibration rootfile = %s", m_rootFileNameCHECK.c_str());
  else
    sprintf(input, "calibration ID = %s", m_idFileNameCHECK.c_str());
  pt_input->AddText(input);
  ((TText*)pt_input->GetListOfLines()->Last())->SetTextColor(kBlue);
  pt_input->SetTextSize(0.02);
  pt_input->SetTextAlign(12);
  pt_input->SetShadowColor(0);
  pt_input->SetBorderSize(0);
  pt_input->SetFillColor(10);
 
  pt_input_title->Draw();
  pt_input->Draw();
 
  TPaveText* pt_cuts_title = new TPaveText(.05, .65, .95, .7);
  TPaveText* pt_cuts = new TPaveText(.05, .15, .8, .60);
  char cuts[512];
  sprintf(cuts, "%s", "selection criteria");
  pt_cuts_title->AddText(cuts);
  pt_cuts_title->SetShadowColor(0);
  pt_cuts_title->SetBorderSize(0);
  pt_cuts_title->SetTextSize(0.03);
  sprintf(cuts, "  An APV chip is selected as problematic if passes the criteria on Noise or CalPeakADC or Pedestal");
  pt_cuts->AddText(cuts);
  // NOISE
  sprintf(cuts, "  Noise: an APV is problematic if 1. or 2. or 3.");
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         1. abs(ref_ave - check_ave) > %1.2f ADC",  m_cutNoise_ave);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         2. more than %d strips with a value %1.2f ADC higher than the value of the ref calibration",  m_cutN_out,
          m_cutNoise_out);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         3. more than %d strips with a value %1.2f ADC lower than the value of the ref calibration",  m_cutN_out,
          m_cutNoise_out);
  pt_cuts->AddText(cuts);
  // CALPEAK ADC
  sprintf(cuts, "  CalPeakADC: an APV is problematic if 1. or 2. or 3.");
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         1. abs(ref_ave - check_ave) > %1.2f ADC",  m_cutCalpeakADC_ave);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         2. more than %d strips with a value %1.1f ADC higher than the value of the ref calibration",  m_cutN_out,
          m_cutCalpeakADC_out);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         3. more than %d strips with a value %1.1f ADC lower than the value of the ref calibration",  m_cutN_out,
          m_cutCalpeakADC_out);
  pt_cuts->AddText(cuts);
  // PEDESTAL
  sprintf(cuts, "  Pedestal: an APV is problematic if 1. or 2. or 3.");
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         1. abs(ref_ave - check_ave) > %1.1f ADC",  m_cutPedestal_ave);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         2. more than %d strips with a value %1.1f ADC higher than the value of the ref calibration",  m_cutN_out,
          m_cutPedestal_out);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "         3. more than %d strips with a value %1.1f ADC lower than the value of the ref calibration",  m_cutN_out,
          m_cutPedestal_out);
  pt_cuts->AddText(cuts);
  sprintf(cuts,
          "  where:");
  pt_cuts->AddText(cuts);
  sprintf(cuts,
          "        - {ref,check}_ave is the variable averaged on one APV chip of the reference or the check calibration");
  pt_cuts->AddText(cuts);
  sprintf(cuts,
          "        - 1 2 and 3 are the problem ID printed on screen while running the python script");
  pt_cuts->AddText(cuts);
  pt_cuts->SetTextSize(0.02);
  pt_cuts->SetShadowColor(0);
  pt_cuts->SetBorderSize(0);
  pt_cuts->SetFillColor(10);
  pt_cuts->SetTextAlign(12);
 
  pt_cuts_title->Draw();
  pt_cuts->Draw();
 
  TPaveText* pt_tag_title = new TPaveText(.05, .03, .95, .07);
  char tag[100];
  sprintf(tag, "analysis algorithm ID 1.0");
  pt_tag_title->AddText(tag);
  //  pt_tag_title->SetTextFont(62);
  pt_tag_title->SetShadowColor(0);
  pt_tag_title->SetFillColor(18);
  pt_tag_title->SetBorderSize(0);
  pt_tag_title->SetTextSize(0.02);
  pt_tag_title->Draw();
  first->Print(m_outputPdfName.c_str());
}
 
void SVDLocalCalibrationsCheckModule::printLayerPage(int layer)
{
 
  TCanvas* cLayer = new TCanvas();
  cLayer->cd();
  TPaveText* pt_title = new TPaveText(.05, .4, .95, 0.6, "blNDC");
  char name[50];
  sprintf(name, "Layer %d", layer);
  pt_title->AddText(name);
  pt_title->SetTextFont(42);
  pt_title->SetTextColor(kBlack);
  pt_title->SetShadowColor(0);
  pt_title->SetFillColor(10);
  pt_title->SetBorderSize(0);
  pt_title->SetTextSize(0.08);
  pt_title->Draw();
  cLayer->Print(m_outputPdfName.c_str());
 
}
 
void SVDLocalCalibrationsCheckModule::printPage(VxdID theVxdID, TList* listUBAD, TList* listVBAD, TList* listUGOOD,
                                                TList* listVGOOD, TString variable, bool isL3)
{
 
  TH2F* refU = nullptr;
  TH2F* refV = nullptr;
  TH2F* checkU = nullptr;
  TH2F* checkV = nullptr;
 
  Int_t minY = 0;
  Int_t maxY = 0;
 
  Float_t leftLine = 0;
  Float_t rightLine = 0;
  Float_t topLine = 0;
 
  if (variable == "Noise") {
    refU = m_h2NoiseREF->getHistogram(theVxdID, 1);
    refV = m_h2NoiseREF->getHistogram(theVxdID, 0);
    checkU = m_h2NoiseCHECK->getHistogram(theVxdID, 1);
    checkV = m_h2NoiseCHECK->getHistogram(theVxdID, 0);
    //    minY = refU->GetYaxis()->GetXmin();
    //    maxY = refU->GetYaxis()->GetXmax();
    minY = 0;
    maxY = 6;
    leftLine = -m_cutNoise_out;
    rightLine = m_cutNoise_out;
    topLine = 5;
  } else   if (variable == "CalpeakADC") {
    refU = m_h2CalpeakADCREF->getHistogram(theVxdID, 1);
    refV = m_h2CalpeakADCREF->getHistogram(theVxdID, 0);
    checkU = m_h2CalpeakADCCHECK->getHistogram(theVxdID, 1);
    checkV = m_h2CalpeakADCCHECK->getHistogram(theVxdID, 0);
    minY = refU->GetYaxis()->GetXmin();
    maxY = refU->GetYaxis()->GetXmax();
    leftLine = -m_cutCalpeakADC_out;
    rightLine = m_cutCalpeakADC_out;
    topLine = 15;
  } else   if (variable == "CalpeakTime") {
    refU = m_h2CalpeakTimeREF->getHistogram(theVxdID, 1);
    refV = m_h2CalpeakTimeREF->getHistogram(theVxdID, 0);
    checkU = m_h2CalpeakTimeCHECK->getHistogram(theVxdID, 1);
    checkV = m_h2CalpeakTimeCHECK->getHistogram(theVxdID, 0);
    minY = refU->GetYaxis()->GetXmin();
    maxY = refU->GetYaxis()->GetXmax();
  } else   if (variable == "Pedestal") {
    refU = m_h2PedestalREF->getHistogram(theVxdID, 1);
    refV = m_h2PedestalREF->getHistogram(theVxdID, 0);
    checkU = m_h2PedestalCHECK->getHistogram(theVxdID, 1);
    checkV = m_h2PedestalCHECK->getHistogram(theVxdID, 0);
    //    minY = refU->GetYaxis()->GetXmin();
    //    maxY = refU->GetYaxis()->GetXmax();
    minY = 250;
    maxY = 500;
    leftLine = -m_cutPedestal_out;
    rightLine = m_cutPedestal_out;
    topLine = 25;
  } else {
    B2FATAL("The printPage function is not implemented for" << LogVar("variable", variable));
  }
  refU->GetYaxis()->SetRangeUser(minY, maxY);
  refV->GetYaxis()->SetRangeUser(minY, maxY);
  checkU->GetYaxis()->SetRangeUser(minY, maxY);
  checkV->GetYaxis()->SetRangeUser(minY, maxY);
 
  refU->SetMarkerColor(kRed);
  refV->SetMarkerColor(kRed);
  checkU->SetMarkerColor(kBlue);
  checkV->SetMarkerColor(kBlue);
 
  float min = minY;
  float max = maxY;
 
  //create outliers lines
  TLine lLeft(leftLine, 0, leftLine, topLine);
  TLine lRight(rightLine, 0, rightLine, topLine);
  lLeft.SetLineColor(15);
  lRight.SetLineColor(15);
  lLeft.SetLineStyle(kDashed);
  lRight.SetLineStyle(kDashed);
 
  //create APVlines
  TLine l1(128, min, 128, max);
  TLine l2(128 * 2, min, 128 * 2, max);
  TLine l3(128 * 3, min, 128 * 3, max);
  TLine l4(128 * 4, min, 128 * 4, max);
  TLine l5(128 * 5, min, 128 * 5, max);
  l1.SetLineColor(15);
  l2.SetLineColor(15);
  l3.SetLineColor(15);
  l4.SetLineColor(15);
  l5.SetLineColor(15);
  TCanvas* c = new TCanvas();
  TPaveText* pt_sensorID = new TPaveText(.495, 0.485, .505, 0.505, "blNDC");
  char name[50];
  sprintf(name, "%d.%d.%.d", theVxdID.getLayerNumber(), theVxdID.getLadderNumber(), theVxdID.getSensorNumber());
  pt_sensorID->AddText(name);
  pt_sensorID->SetTextFont(82);
  pt_sensorID->SetTextColor(kBlack);
  pt_sensorID->SetShadowColor(0);
  pt_sensorID->SetFillColor(10);
  pt_sensorID->SetBorderSize(0);
  pt_sensorID->SetTextSize(0.08);
 
 
  c->Divide(2, 2);
  c->cd(1);
  refU->Draw();
  l1.Draw("same");
  l2.Draw("same");
  l3.Draw("same");
  l4.Draw("same");
  l5.Draw("same");
  refU->Draw("same");
  checkU->Draw("same");
  m_leg2D->Draw("same");
 
  c->cd(2);
  TH1F* objDiff;
  int count = 0;
  if (m_plotGoodAPVs) {
    TIter nextH_uGood(listUGOOD);
    while ((objDiff = (TH1F*)nextH_uGood())) {
      objDiff->SetFillStyle(3004);
      if (count == 0)
        objDiff->Draw();
      else
        objDiff->Draw("same");
      count++;
    }
  }
  TIter nextH_uBad(listUBAD);
  while ((objDiff = (TH1F*)nextH_uBad())) {
    objDiff->SetFillStyle(0);
    if (count == 0)
      objDiff->Draw();
    else
      objDiff->Draw("same");
    count++;
  }
  if (count > 0) {
    lLeft.Draw("same");
    lRight.Draw("same");
    m_legU->Draw("same");
  }
 
  c->cd(3);
  refV->Draw();
  l1.Draw("same");
  l2.Draw("same");
  l3.Draw("same");
  if (isL3) {
    l4.Draw("same");
    l5.Draw("same");
  }
 
  refV->Draw("same");
  checkV->Draw("same");
  m_leg2D->Draw("same");
 
  c->cd(4);
  TIter nextH_vBad(listVBAD);
  count = 0;
  if (m_plotGoodAPVs) {
    TIter nextH_vGood(listVGOOD);
    while ((objDiff = (TH1F*)nextH_vGood())) {
      objDiff->SetFillStyle(3004);
      if (count == 0)
        objDiff->Draw();
      else
        objDiff->Draw("same");
      count++;
    }
  }
  while ((objDiff = (TH1F*)nextH_vBad())) {
    objDiff->SetFillStyle(0);
    if (count == 0)
      objDiff->Draw();
    else
      objDiff->Draw("same");
    count++;
  }
  if (count > 0) {
    lLeft.Draw("same");
    lRight.Draw("same");
    if (isL3)
      m_legU->Draw("same");
    else
      m_legV->Draw("same");
  }
  c->cd();
  if (variable == "Noise")
    pt_sensorID->Draw("same");
  c->Print(m_outputPdfName.c_str());
 
}
 
int SVDLocalCalibrationsCheckModule::hasAnyProblem(TH1F* h, float cutAve, float cutCOUNT)
{
 
  float average = h->GetMean();
  if (std::fabs(average) > cutAve)
    return 1;
 
  TAxis* xaxis = h->GetXaxis();
  Int_t bin1 = xaxis->FindBin(-cutCOUNT);
  Int_t bin2 = xaxis->FindBin(cutCOUNT);
  if (bin1 > bin2) {
    int tmp = bin1;
    bin1 = bin2;
    bin2 = tmp;
  }
 
  B2DEBUG(1, bin1 << " -> " << bin2 << " with " << xaxis->GetNbins() << " bins");
 
  if (h->Integral(1, bin1) > m_cutN_out - 1) return 2;
 
  if (h->Integral(bin2, xaxis->GetNbins()) > m_cutN_out - 1) return 3;
 
  return 0;
}
 
 
void SVDLocalCalibrationsCheckModule::setAPVHistoStyles(SVDAPVHistograms<TH1F>* m_APVhistos)
{
 
  VXD::GeoCache& aGeometry = VXD::GeoCache::getInstance();
  std::set<Belle2::VxdID> svdLayers = aGeometry.getLayers(VXD::SensorInfoBase::SVD);
  std::set<Belle2::VxdID>::iterator itSvdLayers = svdLayers.begin();
 
  while ((itSvdLayers != svdLayers.end()) && (itSvdLayers->getLayerNumber() != 7)) { //loop on Layers
 
    std::set<Belle2::VxdID> svdLadders = aGeometry.getLadders(*itSvdLayers);
    std::set<Belle2::VxdID>::iterator itSvdLadders = svdLadders.begin();
 
    while (itSvdLadders != svdLadders.end()) { //loop on Ladders
 
      std::set<Belle2::VxdID> svdSensors = aGeometry.getSensors(*itSvdLadders);
      std::set<Belle2::VxdID>::iterator itSvdSensors = svdSensors.begin();
 
      while (itSvdSensors != svdSensors.end()) { //loop on sensors
 
        int layer = itSvdSensors->getLayerNumber();
        int ladder =  itSvdSensors->getLadderNumber();
        int sensor = itSvdSensors->getSensorNumber();
        Belle2::VxdID theVxdID(layer, ladder, sensor);
        const SVD::SensorInfo* currentSensorInfo = dynamic_cast<const SVD::SensorInfo*>(&VXD::GeoCache::getInstance().getSensorInfo(
                                                     theVxdID));
 
        for (int side = 0; side < 2; side++) {
 
          int Ncells = currentSensorInfo->getUCells();
          if (side == 0)
            Ncells = currentSensorInfo->getVCells();
 
          int Napv = Ncells / 128;
 
          for (int m_APV = 0; m_APV < Napv; m_APV++) {
 
            TH1F* h = m_APVhistos->getHistogram(theVxdID, side, m_APV);
 
            h->SetFillColor(m_apvColors[m_APV]);
            h->SetLineColor(m_apvColors[m_APV]);
            h->SetMarkerColor(m_apvColors[m_APV]);
          }
        }
 
        ++itSvdSensors;
      }
      ++itSvdLadders;
    }
    ++itSvdLayers;
  }
 
 
}
 
 
void SVDLocalCalibrationsCheckModule::printAPVSummaryPages()
{
 
  TPaveText* pt_cuts_title = new TPaveText(.05, .6, .95, .65);
  TPaveText* pt_cuts = new TPaveText(.15, .5, .85, .55);
  char cuts[512];
  sprintf(cuts, "%s", "APV SUMMARY");
  pt_cuts_title->SetShadowColor(0);
  pt_cuts_title->SetBorderSize(0);
  pt_cuts_title->SetTextSize(0.03);
  pt_cuts_title->AddText(cuts);
  sprintf(cuts, "each bin of the plots in the next pages contains the number of problematic  APV chips of the sensor");
  pt_cuts->AddText(cuts);
  sprintf(cuts, "corresponding to the combination of column (ladder number) and row (layer and sensor number)");
  pt_cuts->AddText(cuts);
  pt_cuts->SetTextSize(0.02);
  pt_cuts->SetShadowColor(0);
  pt_cuts->SetBorderSize(0);
  pt_cuts->SetFillColor(10);
  pt_cuts->SetTextAlign(12);
 
  TCanvas* explain = new TCanvas();
  pt_cuts_title->Draw();
  pt_cuts->Draw();
  explain->Print(m_outputPdfName.c_str());
 
  TCanvas* noise = new TCanvas();
  noise->SetGridx();
  noise->Divide(2, 2);
  noise->cd(1);
  m_hNoiseSummary->getHistogram(1)->Draw("colztext");
  noise->cd(3);
  m_hNoiseSummary->getHistogram(0)->Draw("colztext");
  noise->Print(m_outputPdfName.c_str());
 
  TCanvas* calpeakADC = new TCanvas();
  calpeakADC->Divide(2, 2);
  calpeakADC->cd(1);
  m_hCalpeakADCSummary->getHistogram(1)->Draw("colztext");
  calpeakADC->cd(3);
  m_hCalpeakADCSummary->getHistogram(0)->Draw("colztext");
  calpeakADC->Print(m_outputPdfName.c_str());
 
 
 
  TCanvas* pedestal = new TCanvas();
  pedestal->Divide(2, 2);
  pedestal->cd(1);
  m_hPedestalSummary->getHistogram(1)->Draw("colztext");
  pedestal->cd(3);
  m_hPedestalSummary->getHistogram(0)->Draw("colztext");
  pedestal->Print(m_outputPdfName.c_str());
 
 
}
 
void SVDLocalCalibrationsCheckModule::printMaskedSummaryPages()
{
 
  TPaveText* pt_cuts_title = new TPaveText(.05, .6, .95, .65);
  TPaveText* pt_cuts = new TPaveText(.15, .4, .85, .55);
  char cuts[512];
  sprintf(cuts, "%s", "Masked Strips SUMMARY");
  pt_cuts_title->SetShadowColor(0);
  pt_cuts_title->SetBorderSize(0);
  pt_cuts_title->SetTextSize(0.03);
  pt_cuts_title->AddText(cuts);
  float nU = 768 * (2 * 7 + 3 * 10 + 4 * 12 + 5 * 16);
  float nV = 512 * (2 * 7) + 768 * (3 * 10 + 4 * 12 + 5 * 16);
  sprintf(cuts, "Number of MASKED strips on the u/P side in the REF   calibration = %d (%.3f)%%", m_nMaskedUREF,
          m_nMaskedUREF * 100. / nU);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "Number of MASKED strips on the u/P side in the CHECK calibration = %d (%.3f)%%", m_nMaskedUCHECK,
          m_nMaskedUCHECK * 100. / nU);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "Number of MASKED strips on the v/N side in the REF   calibration = %d (%.3f)%%", m_nMaskedVREF,
          m_nMaskedVREF * 100. / nV);
  pt_cuts->AddText(cuts);
  sprintf(cuts, "Number of MASKED strips on the v/N side in the CHECK calibration = %d (%.3f)%%", m_nMaskedVCHECK,
          m_nMaskedVCHECK * 100. / nV);
  pt_cuts->AddText(cuts);
  pt_cuts->SetTextSize(0.02);
  pt_cuts->SetShadowColor(0);
  pt_cuts->SetBorderSize(0);
  pt_cuts->SetFillColor(10);
  pt_cuts->SetTextAlign(12);
 
  TCanvas* explain = new TCanvas();
  pt_cuts_title->Draw();
  pt_cuts->Draw();
  explain->Print(m_outputPdfName.c_str());
 
  TCanvas* mask = new TCanvas();
  mask->SetGridx();
  mask->Divide(2, 2);
  mask->cd(1);
  m_hMaskSummary->getHistogram(1)->Draw("colztext");
  mask->cd(2);
  m_hMaskSummaryCHECK->getHistogram(1)->Draw("colztext");
  mask->cd(3);
  m_hMaskSummary->getHistogram(0)->Draw("colztext");
  mask->cd(4);
  m_hMaskSummaryCHECK->getHistogram(0)->Draw("colztext");
  mask->Print(m_outputPdfName.c_str());
 
 
}
 
void SVDLocalCalibrationsCheckModule::printLastPage()
{
 
  TCanvas* empty = new TCanvas();
  TString pdf_close = TString(m_outputPdfName) + "]";
  empty->Print(pdf_close);
 
 
}
 
 
void SVDLocalCalibrationsCheckModule::createLegends()
{
 
 
  m_legU = new TLegend(0.75, 0.55, 0.89, 0.89);
  m_legV = new TLegend(0.75, 0.65, 0.89, 0.89);
  m_legU->SetFillStyle(0);
  m_legV->SetFillStyle(0);
 
 
  TH1F* hAPV1 = new TH1F("apv1", "apv 1", 1, 0, 1);
  hAPV1->SetLineColor(m_apvColors[0]);
  m_legU->AddEntry(hAPV1, "apv 1", "l");
  m_legV->AddEntry(hAPV1, "apv 1", "l");
  TH1F* hAPV2 = new TH1F("apv2", "apv 2", 2, 0, 2);
  hAPV2->SetLineColor(m_apvColors[1]);
  hAPV2->SetMarkerColor(m_apvColors[1]);
  hAPV2->SetMarkerStyle(21);
  hAPV2->SetMarkerSize(0.5);
  m_legU->AddEntry(hAPV2, "apv 2", "l");
  m_legV->AddEntry(hAPV2, "apv 2", "l");
  TH1F* hAPV3 = new TH1F("apv3", "apv 3", 3, 0, 3);
  hAPV3->SetLineColor(m_apvColors[2]);
  m_legU->AddEntry(hAPV3, "apv 3", "l");
  m_legV->AddEntry(hAPV3, "apv 3", "l");
  TH1F* hAPV4 = new TH1F("apv4", "apv 4", 4, 0, 4);
  hAPV4->SetLineColor(m_apvColors[3]);
  hAPV4->SetMarkerColor(m_apvColors[3]);
  hAPV4->SetMarkerStyle(21);
  hAPV4->SetMarkerSize(0.5);
  m_legU->AddEntry(hAPV4, "apv 4", "l");
  m_legV->AddEntry(hAPV4, "apv 4", "l");
  TH1F* hAPV5 = new TH1F("apv5", "apv 5", 5, 0, 5);
  hAPV5->SetLineColor(m_apvColors[4]);
  m_legU->AddEntry(hAPV5, "apv 5", "l");
  TH1F* hAPV6 = new TH1F("apv6", "apv 6", 6, 0, 6);
  hAPV6->SetLineColor(m_apvColors[5]);
  m_legU->AddEntry(hAPV6, "apv 6", "l");
 
  m_leg2D = new TLegend(0.78, 0.75, 0.89, 0.89);
  m_leg2D->AddEntry(hAPV2, "ref", "pl");
  m_leg2D->AddEntry(hAPV4, "check", "pl");
  m_leg2D->SetFillStyle(0);
}