Calculate track isolation variables on the input ParticleList. More...

#include <TrackIsoCalculatorModule.h>

Inheritance diagram for TrackIsoCalculatorModule:

Public Types
enum	EModulePropFlags { c_Input = 1 , c_Output = 2 , c_ParallelProcessingCertified = 4 , c_HistogramManager = 8 , c_InternalSerializer = 16 , c_TerminateInAllProcesses = 32 , c_DontCollectStatistics = 64 }
	Each module can be tagged with property flags, which indicate certain features of the module. More...

typedef ModuleCondition::EAfterConditionPath	EAfterConditionPath
	Forward the EAfterConditionPath definition from the ModuleCondition.

Public Member Functions
	TrackIsoCalculatorModule ()
	Constructor: Sets the description, the properties and the parameters of the module.

	~TrackIsoCalculatorModule () override
	Destructor, use this to clean up anything you created in the constructor.

void	initialize () override
	Use this to initialize resources or memory your module needs.

void	event () override
	Called once for each event.

virtual std::vector< std::string >	getFileNames (bool outputFiles)
	Return a list of output filenames for this modules.

virtual void	beginRun ()
	Called when entering a new run.

virtual void	endRun ()
	This method is called if the current run ends.

virtual void	terminate ()
	This method is called at the end of the event processing.

const std::string &	getName () const
	Returns the name of the module.

const std::string &	getType () const
	Returns the type of the module (i.e.

const std::string &	getPackage () const
	Returns the package this module is in.

const std::string &	getDescription () const
	Returns the description of the module.

void	setName (const std::string &name)
	Set the name of the module.

void	setPropertyFlags (unsigned int propertyFlags)
	Sets the flags for the module properties.

LogConfig &	getLogConfig ()
	Returns the log system configuration.

void	setLogConfig (const LogConfig &logConfig)
	Set the log system configuration.

void	setLogLevel (int logLevel)
	Configure the log level.

void	setDebugLevel (int debugLevel)
	Configure the debug messaging level.

void	setAbortLevel (int abortLevel)
	Configure the abort log level.

void	setLogInfo (int logLevel, unsigned int logInfo)
	Configure the printed log information for the given level.

void	if_value (const std::string &expression, const std::shared_ptr< Path > &path, EAfterConditionPath afterConditionPath=EAfterConditionPath::c_End)
	Add a condition to the module.

void	if_false (const std::shared_ptr< Path > &path, EAfterConditionPath afterConditionPath=EAfterConditionPath::c_End)
	A simplified version to add a condition to the module.

void	if_true (const std::shared_ptr< Path > &path, EAfterConditionPath afterConditionPath=EAfterConditionPath::c_End)
	A simplified version to set the condition of the module.

bool	hasCondition () const
	Returns true if at least one condition was set for the module.

const ModuleCondition *	getCondition () const
	Return a pointer to the first condition (or nullptr, if none was set)

const std::vector< ModuleCondition > &	getAllConditions () const
	Return all set conditions for this module.

bool	evalCondition () const
	If at least one condition was set, it is evaluated and true returned if at least one condition returns true.

std::shared_ptr< Path >	getConditionPath () const
	Returns the path of the last true condition (if there is at least one, else reaturn a null pointer).

Module::EAfterConditionPath	getAfterConditionPath () const
	What to do after the conditional path is finished.

std::vector< std::shared_ptr< Path > >	getAllConditionPaths () const
	Return all condition paths currently set (no matter if the condition is true or not).

bool	hasProperties (unsigned int propertyFlags) const
	Returns true if all specified property flags are available in this module.

bool	hasUnsetForcedParams () const
	Returns true and prints error message if the module has unset parameters which the user has to set in the steering file.

const ModuleParamList &	getParamList () const
	Return module param list.

template<typename T>
ModuleParam< T > &	getParam (const std::string &name) const
	Returns a reference to a parameter.

bool	hasReturnValue () const
	Return true if this module has a valid return value set.

int	getReturnValue () const
	Return the return value set by this module.

std::shared_ptr< PathElement >	clone () const override
	Create an independent copy of this module.

std::shared_ptr< boost::python::list >	getParamInfoListPython () const
	Returns a python list of all parameters.

Static Public Member Functions
static void	exposePythonAPI ()
	Exposes methods of the Module class to Python.

Protected Member Functions
virtual void	def_initialize ()
	Wrappers to make the methods without "def_" prefix callable from Python.

virtual void	def_beginRun ()
	Wrapper method for the virtual function beginRun() that has the implementation to be used in a call from Python.

virtual void	def_event ()
	Wrapper method for the virtual function event() that has the implementation to be used in a call from Python.

virtual void	def_endRun ()
	This method can receive that the current run ends as a call from the Python side.

virtual void	def_terminate ()
	Wrapper method for the virtual function terminate() that has the implementation to be used in a call from Python.

void	setDescription (const std::string &description)
	Sets the description of the module.

void	setType (const std::string &type)
	Set the module type.

template<typename T>
void	addParam (const std::string &name, T &paramVariable, const std::string &description, const T &defaultValue)
	Adds a new parameter to the module.

template<typename T>
void	addParam (const std::string &name, T &paramVariable, const std::string &description)
	Adds a new enforced parameter to the module.

void	setReturnValue (int value)
	Sets the return value for this module as integer.

void	setReturnValue (bool value)
	Sets the return value for this module as bool.

void	setParamList (const ModuleParamList &params)
	Replace existing parameter list.

Private Member Functions
double	getDistAtDetSurface (const Particle iParticle, const Particle jParticle, const std::string &detLayerName) const
	Calculate the distance between the points where the two input extrapolated track helices cross the given detector layer's cylindrical surface.

double	getDetectorWeight (const Particle *iParticle, const std::string &detName) const
	Get the PID weight, $w_{d} \in [-1, 0]$ , for this particle and detector reading it from the payload, if selected.

double	getWeightedSumNonIsoLayers (const Particle *iParticle, const std::string &detName, const float detWeight) const
	Get the sum of layers with a close-by track, divided by the total number of layers, for the given detector , weighted by the PID detector separation score (if requested):

double	getWeightedSumInvDists (const Particle *iParticle, const std::string &detName, const float detWeight) const
	Get the sum of the inverse (scaled) minimum distances over the given detector layers, weighted by the PID detector separation score (if requested):

double	getDistThreshold (Const::EDetector det, int layer) const
	Get the threshold value per detector layer for the distance to closest ext.

bool	onlySelectedStdChargedInDecay ()
	Check whether input particle list and reference list are of a valid charged stable particle.

Const::EDetector	getDetEnum (const std::string &detName) const
	Get the enum type for this detector name.

std::list< ModulePtr >	getModules () const override
	no submodules, return empty list

std::string	getPathString () const override
	return the module name.

void	setParamPython (const std::string &name, const boost::python::object &pyObj)
	Implements a method for setting boost::python objects.

void	setParamPythonDict (const boost::python::dict &dictionary)
	Implements a method for reading the parameter values from a boost::python dictionary.

Private Attributes
StoreArray< Particle >	m_particles
	StoreArray of Particles.

std::string	m_decayString
	The name of the input charged stable particle list, or composite particle w/ charged stable daughters for which distances are to be calculated.

unsigned short	m_nSelectedDaughters
	The number of selected daughters in the decay string.

std::string	m_pListReferenceName
	The name of the input ParticleList of reference tracks.

std::vector< std::string >	m_detNames
	The list of names of the detectors at whose inner (cylindrical) surface we extrapolate each track's polar and azimuthal angle.

std::unordered_map< std::string, std::string >	m_detLayerToDistVariable
	Map that associates to each detector layer (e.g., 'CDC6') the name of the variable representing the distance to the closest particle in the reference list, based on the track helix extrapolation.

std::unordered_map< std::string, std::string >	m_detLayerToRefPartIdxVariable
	Map that associates to each detector layer (e.g, 'CDC6') the name of the variable representing the mdst array index of the closest particle in the reference list.

std::string	m_isoScoreVariable
	The name of the variable representing the track isolation score.

std::string	m_isoScoreVariableAsWeightedAvg
	The name of the variable representing the track isolation score.

std::map< std::pair< std::string, int >, double >	m_distThreshPerDetLayer
	Threshold values for the distance (in [cm]) to closest ext.

StoreObjPtr< EventMetaData >	m_event_metadata
	The event information.

StoreObjPtr< ParticleList >	m_pListTarget
	The input ParticleList object for which distances are to be calculated.

DecayDescriptor	m_decaydescriptor
	< Decay descriptor of decays to look for.

StoreObjPtr< ParticleList >	m_pListReference
	The input ParticleList object of reference tracks.

bool	m_useHighestProbMassForExt
	If this option is set, the helix extrapolation for the target and reference particles will use the track fit result for the most probable mass hypothesis, namely, the one that gives the highest chi2Prob of the fit.

bool	m_excludePIDDetWeights
	Exclude the PID detector weights for the isolation score definition.

std::string	m_payloadName
	The name of the database payload object with the MVA weights.

std::unique_ptr< DBObjPtr< PIDDetectorWeights > >	m_DBWeights
	Interface to get the database payload with the PID detector weights.

std::string	m_name
	The name of the module, saved as a string (user-modifiable)

std::string	m_type
	The type of the module, saved as a string.

std::string	m_package
	Package this module is found in (may be empty).

std::string	m_description
	The description of the module.

unsigned int	m_propertyFlags
	The properties of the module as bitwise or (with \|) of EModulePropFlags.

LogConfig	m_logConfig
	The log system configuration of the module.

ModuleParamList	m_moduleParamList
	List storing and managing all parameter of the module.

bool	m_hasReturnValue
	True, if the return value is set.

int	m_returnValue
	The return value.

std::vector< ModuleCondition >	m_conditions
	Module condition, only non-null if set.

Detailed Description

Calculate track isolation variables on the input ParticleList.

Definition at line 33 of file TrackIsoCalculatorModule.h.

Member Typedef Documentation

◆ EAfterConditionPath

typedef ModuleCondition::EAfterConditionPath EAfterConditionPath

inherited

Forward the EAfterConditionPath definition from the ModuleCondition.

Definition at line 88 of file Module.h.

Member Enumeration Documentation

◆ EModulePropFlags

enum EModulePropFlags

inherited

Each module can be tagged with property flags, which indicate certain features of the module.

Enumerator
c_Input	This module is an input module (reads data).
c_Output	This module is an output module (writes data).
c_ParallelProcessingCertified	This module can be run in parallel processing mode safely (All I/O must be done through the data store, in particular, the module must not write any files.)
c_HistogramManager	This module is used to manage histograms accumulated by other modules.
c_InternalSerializer	This module is an internal serializer/deserializer for parallel processing.
c_TerminateInAllProcesses	When using parallel processing, call this module's terminate() function in all processes(). This will also ensure that there is exactly one process (single-core if no parallel modules found) or at least one input, one main and one output process.
c_DontCollectStatistics	No statistics is collected for this module.

Definition at line 77 of file Module.h.

                          {
      c_Input                       = 1,  
      c_Output                      = 2,  
      c_ParallelProcessingCertified = 4,  
      c_HistogramManager            = 8, 
      c_InternalSerializer          = 16,  
      c_TerminateInAllProcesses     = 32,  
      c_DontCollectStatistics       = 64,  
    };

Constructor & Destructor Documentation

◆ TrackIsoCalculatorModule()

TrackIsoCalculatorModule ( )

Constructor: Sets the description, the properties and the parameters of the module.

Definition at line 26 of file TrackIsoCalculatorModule.cc.

                                                   : Module()
{
  // Set module properties
  setDescription(
    R"DOC(Calculate track isolation variables on the charged stable particles, or selected charged daughters, of the input ParticleList.)DOC");
  setPropertyFlags(c_ParallelProcessingCertified);
 
  // Parameter definitions
  addParam("decayString",
           m_decayString,
           "The name of the input charged stable particle list, e.g. ``mu+:all``, or a composite particle w/ charged stable daughters for which distances are to be calculated, e.g. ``D0 -> ^K- pi+``. Note that in the latter case we allow only one daughter to be selected in the decay string per module instance.");
  addParam("particleListReference",
           m_pListReferenceName,
           "The name of the input ParticleList of reference tracks. Must be a charged stable particle as defined in Const::chargedStableSet.");
  addParam("detectorNames",
           m_detNames,
           "The list of names of the detectors at whose (cylindrical) surface(s) we extrapolate each helix's polar and azimuthal angle. Allowed values: {CDC, TOP, ARICH, ECL, KLM}.",
           std::vector<std::string>());
  addParam("useHighestProbMassForExt",
           m_useHighestProbMassForExt,
           "If this option is set, the helix extrapolation for the target and reference particles will use the track fit result for the most probable mass hypothesis, namely, the one that gives the highest chi2Prob of the fit.",
           bool(false));
  addParam("payloadName",
           m_payloadName,
           "The name of the database payload object with the PID detector weights.",
           std::string("PIDDetectorWeights"));
  addParam("excludePIDDetWeights",
           m_excludePIDDetWeights,
           "If set to true, will not use the PID detector weights for the score definition.",
           bool(false));
}

◆ ~TrackIsoCalculatorModule()

~TrackIsoCalculatorModule ( )

override

Destructor, use this to clean up anything you created in the constructor.

Definition at line 58 of file TrackIsoCalculatorModule.cc.

59{

60}

Member Function Documentation

◆ beginRun()

virtual void beginRun ( void )

inlinevirtualinherited

Called when entering a new run.

Called at the beginning of each run, the method gives you the chance to change run dependent constants like alignment parameters, etc.

This method can be implemented by subclasses.

Definition at line 146 of file Module.h.

146{};

◆ clone()

std::shared_ptr< PathElement > clone ( ) const

overridevirtualinherited

Create an independent copy of this module.

Note that parameters are shared, so changing them on a cloned module will also affect the original module.

Implements PathElement.

Definition at line 179 of file Module.cc.

{
  ModulePtr newModule = ModuleManager::Instance().registerModule(getType());
  newModule->m_moduleParamList.setParameters(getParamList());
  newModule->setName(getName());
  newModule->m_package = m_package;
  newModule->m_propertyFlags = m_propertyFlags;
  newModule->m_logConfig = m_logConfig;
  newModule->m_conditions = m_conditions;
 
  return newModule;
}

◆ def_beginRun()

virtual void def_beginRun ( )

inlineprotectedvirtualinherited

Wrapper method for the virtual function beginRun() that has the implementation to be used in a call from Python.

Reimplemented in PyModule.

Definition at line 425 of file Module.h.

425{ beginRun(); }

◆ def_endRun()

virtual void def_endRun ( )

inlineprotectedvirtualinherited

This method can receive that the current run ends as a call from the Python side.

For regular C++-Modules that forwards the call to the regular endRun() method.

Reimplemented in PyModule.

Definition at line 438 of file Module.h.

438{ endRun(); }

◆ def_event()

virtual void def_event ( )

inlineprotectedvirtualinherited

Wrapper method for the virtual function event() that has the implementation to be used in a call from Python.

Reimplemented in PyModule.

Definition at line 431 of file Module.h.

431{ event(); }

◆ def_initialize()

virtual void def_initialize ( )

inlineprotectedvirtualinherited

Wrappers to make the methods without "def_" prefix callable from Python.

Overridden in PyModule. Wrapper method for the virtual function initialize() that has the implementation to be used in a call from Python.

Reimplemented in PyModule.

Definition at line 419 of file Module.h.

419{ initialize(); }

◆ def_terminate()

virtual void def_terminate ( )

inlineprotectedvirtualinherited

Wrapper method for the virtual function terminate() that has the implementation to be used in a call from Python.

Reimplemented in PyModule.

Definition at line 444 of file Module.h.

444{ terminate(); }

◆ endRun()

virtual void endRun ( void )

inlinevirtualinherited

This method is called if the current run ends.

Use this method to store information, which should be aggregated over one run.

This method can be implemented by subclasses.

Definition at line 165 of file Module.h.

165{};

◆ evalCondition()

bool evalCondition ( ) const

inherited

If at least one condition was set, it is evaluated and true returned if at least one condition returns true.

If no condition or result value was defined, the method returns false. Otherwise, the condition is evaluated and true returned, if at least one condition returns true. To speed up the evaluation, the condition strings were already parsed in the method if_value().

Returns: True if at least one condition and return value exists and at least one condition expression was evaluated to true.

Definition at line 96 of file Module.cc.

{
  if (m_conditions.empty()) return false;
 
  //okay, a condition was set for this Module...
  if (!m_hasReturnValue) {
    B2FATAL("A condition was set for '" << getName() << "', but the module did not set a return value!");
  }
 
  for (const auto& condition : m_conditions) {
    if (condition.evaluate(m_returnValue)) {
      return true;
    }
  }
  return false;
}

◆ event()

void event ( void )

overridevirtual

Called once for each event.

This is most likely where your module will actually do anything.

Reimplemented from Module.

Definition at line 141 of file TrackIsoCalculatorModule.cc.

{
  B2DEBUG(11, "Start processing EVENT: " << m_event_metadata->getEvent());
 
  const auto nMotherParticles = m_pListTarget->getListSize();
 
  // Fill transient container of all selected charged particles in the decay
  // for which the distance to nearest neighbour is to be calculated.
  // If the input ParticleList is that of standard charged particles, just copy
  // the whole list over, otherwise loop over the selected charged daughters.
  std::unordered_map<int, const Particle*> targetParticles;
  targetParticles.reserve(nMotherParticles);
 
  for (unsigned int iPart(0); iPart < nMotherParticles; ++iPart) {
 
    auto iParticle = m_pListTarget->getParticle(iPart);
 
    // Loop over the input detectors.
    for (const auto& detName : m_detNames) {
 
      // Loop over the layer of the input detector.
      for (const auto& iLayer : DetectorSurface::detToLayers.at(detName)) {
 
        auto iDetLayer = detName + std::to_string(iLayer);
 
        if (m_nSelectedDaughters) {
          for (auto* iDaughter : m_decaydescriptor.getSelectionParticles(iParticle)) {
            // Check if the distance for this target particle has been set already,
            // e.g. by a previous instance of this module.
            if (iDaughter->hasExtraInfo(m_detLayerToDistVariable[iDetLayer])) {
              continue;
            }
            targetParticles.insert({iDaughter->getMdstSource(), iDaughter});
          }
        } else {
          if (iParticle->hasExtraInfo(m_detLayerToDistVariable[iDetLayer])) {
            continue;
          }
          targetParticles.insert({iParticle->getMdstSource(), iParticle});
        }
 
      }
    }
  }
 
  const auto nParticlesTarget = targetParticles.size();
  const auto nParticlesReference = m_pListReference->getListSize();
 
  // Loop over the input detectors.
  for (const auto& detName : m_detNames) {
 
    // Loop over the layer of the input detector.
    for (const auto& iLayer : DetectorSurface::detToLayers.at(detName)) {
 
      auto iDetLayer = detName + std::to_string(iLayer);
 
      B2DEBUG(11, "\n"
              << "Detector surface: " << iDetLayer << "\n"
              << "nMotherParticles: " << nMotherParticles << "\n"
              << "nParticlesTarget: " << nParticlesTarget << "\n"
              << "nParticlesReference: " << nParticlesReference);
 
      double dummyDist(-1.0);
 
      // Store the pair-wise distances in a map,
      // where the keys are pairs of mdst indexes.
      std::map<std::pair<int, int>, double> particleMdstSourcePairsToDist;
 
      // Loop over input particle list
      for (const auto& targetParticle : targetParticles) {
 
        auto iMdstSource = targetParticle.first;
        auto iParticle = targetParticle.second;
 
        for (unsigned int jPart(0); jPart < nParticlesReference; ++jPart) {
 
          auto jParticle = m_pListReference->getParticle(jPart);
          auto jMdstSource = jParticle->getMdstSource();
 
          auto partMdstSourcePair = std::make_pair(iMdstSource, jMdstSource);
 
          // Set dummy distance if same particle.
          if (iMdstSource == jMdstSource) {
            particleMdstSourcePairsToDist[partMdstSourcePair] = dummyDist;
            continue;
          }
          // If:
          //
          // - the mass hypothesis of the best fit is used, OR
          // - the mass hypothesis of the 'default' fit of the two particles is the same,
          //
          // avoid re-doing the calculation if a pair with the flipped mdst indexes in the map already exists.
          if (m_useHighestProbMassForExt || (iParticle->getPDGCodeUsedForFit() == jParticle->getPDGCodeUsedForFit())) {
            if (particleMdstSourcePairsToDist.count({jMdstSource, iMdstSource})) {
              particleMdstSourcePairsToDist[partMdstSourcePair] = particleMdstSourcePairsToDist[ {jMdstSource, iMdstSource}];
              continue;
            }
          }
          // Calculate the pair-wise distance.
          particleMdstSourcePairsToDist[partMdstSourcePair] = this->getDistAtDetSurface(iParticle, jParticle, iDetLayer);
        }
 
      }
 
      // For each particle in the input list, find the minimum among all distances to the reference particles.
      for (const auto& targetParticle : targetParticles) {
 
        auto iMdstSource = targetParticle.first;
        auto iParticle = targetParticle.second;
 
        // Save the distances and the mdst indexes of the reference particles.
        std::vector<std::pair<double, int>> iDistancesAndRefMdstSources;
        for (const auto& [mdstIdxs, dist] : particleMdstSourcePairsToDist) {
          if (mdstIdxs.first == iMdstSource) {
            if (!std::isnan(dist) && dist >= 0) {
              iDistancesAndRefMdstSources.push_back(std::make_pair(dist, mdstIdxs.second));
            }
          }
        }
 
        if (!iDistancesAndRefMdstSources.size()) {
          B2DEBUG(12, "The container of distances is empty. Perhaps the target and reference lists contain the same exact particles?");
          continue;
        }
 
        const auto minDist = *std::min_element(iDistancesAndRefMdstSources.begin(), iDistancesAndRefMdstSources.end(),
        [](const auto & l, const auto & r) {return l.first < r.first;});
 
        auto jParticle = m_pListReference->getParticleWithMdstSource(minDist.second);
 
        B2DEBUG(11, "\n"
                << "Particle w/ mdstSource[" << iMdstSource << "] (PDG = "
                << iParticle->getPDGCode() << "). Closest charged particle w/ mdstSource["
                << minDist.second
                << "] (PDG = " << jParticle->getPDGCode()
                << ") at " << iDetLayer
                << " surface is found at D = " << minDist.first
                << " [cm]\n"
                << "Storing extraInfo variables:\n"
                << m_detLayerToDistVariable[iDetLayer]
                << "\n"
                << m_detLayerToRefPartIdxVariable[iDetLayer]);
 
        if (!iParticle->hasExtraInfo(m_detLayerToDistVariable[iDetLayer])) {
          m_particles[iParticle->getArrayIndex()]->addExtraInfo(m_detLayerToDistVariable[iDetLayer], minDist.first);
        }
        m_particles[iParticle->getArrayIndex()]->writeExtraInfo(m_detLayerToRefPartIdxVariable[iDetLayer], minDist.second);
 
      } // end loop over input particle list.
 
    } // end loop over detector layers.
 
  } // end loop over input detectors.
 
  // Now calculate the isolation score for each target particle.
  for (const auto& targetParticle : targetParticles) {
 
    auto iMdstSource = targetParticle.first;
    auto iParticle = targetParticle.second;
 
    // Initialise isolation score.
    double isoScore(0.0);
    double isoScoreAsWeightedAvg(0.0);
    double sumWeights(0.0);
 
    B2DEBUG(11, "Particle w/ mdstSource[" << iMdstSource << "] (PDG = " << iParticle->getPDGCode() << ").");
 
    for (const auto& detName : m_detNames) {
 
      auto detWeight = this->getDetectorWeight(iParticle, detName);
 
      auto weightedSumNonIsoLayers = this->getWeightedSumNonIsoLayers(iParticle, detName, detWeight);
      auto weightedSumInvDists = this->getWeightedSumInvDists(iParticle, detName, detWeight);
 
      isoScore += weightedSumNonIsoLayers;
      isoScoreAsWeightedAvg += weightedSumInvDists;
      sumWeights += detWeight;
 
    }
 
    // Normalise the isolation score to lie in [0, 1].
    auto minScore = 0.;
    auto maxScore = m_detNames.size();
    isoScore = (isoScore - minScore) / (maxScore - minScore);
 
    isoScoreAsWeightedAvg /= sumWeights;
    // Normalise weighted average between [0, 1].
    // But first, clip values that are too large.
    // Finally, ensure a larger score is assigned for well-isolated tracks.
    isoScoreAsWeightedAvg = 1. - ((std::min(isoScoreAsWeightedAvg, 1e2) - minScore) / (1e2 - minScore));
 
    B2DEBUG(11, "\n"
            << "Isolation score: " << isoScore
            << "\n"
            << "Isolation score (as weighted avg): " << isoScoreAsWeightedAvg
            << "\n"
            << "Storing extraInfo variable:\n"
            << m_isoScoreVariable
            << "\n"
            << m_isoScoreVariableAsWeightedAvg);
 
    m_particles[iParticle->getArrayIndex()]->writeExtraInfo(m_isoScoreVariable, isoScore);
    m_particles[iParticle->getArrayIndex()]->writeExtraInfo(m_isoScoreVariableAsWeightedAvg, isoScoreAsWeightedAvg);
 
  }
 
  B2DEBUG(11, "Finished processing EVENT: " << m_event_metadata->getEvent());
 
}

◆ exposePythonAPI()

void exposePythonAPI ( )

staticinherited

Exposes methods of the Module class to Python.

Definition at line 325 of file Module.cc.

{
  // to avoid confusion between std::arg and boost::python::arg we want a shorthand namespace as well
  namespace bp = boost::python;
 
  docstring_options options(true, true, false); //userdef, py sigs, c++ sigs
 
  void (Module::*setReturnValueInt)(int) = &Module::setReturnValue;
 
  enum_<Module::EAfterConditionPath>("AfterConditionPath",
                                     R"(Determines execution behaviour after a conditional path has been executed:
 
.. attribute:: END
 
  End processing of this path after the conditional path. (this is the default for if_value() etc.)
 
.. attribute:: CONTINUE
 
  After the conditional path, resume execution after this module.)")
  .value("END", Module::EAfterConditionPath::c_End)
  .value("CONTINUE", Module::EAfterConditionPath::c_Continue)
  ;
 
  /* Do not change the names of >, <, ... we use them to serialize conditional paths */
  enum_<Belle2::ModuleCondition::EConditionOperators>("ConditionOperator")
  .value(">", Belle2::ModuleCondition::EConditionOperators::c_GT)
  .value("<", Belle2::ModuleCondition::EConditionOperators::c_ST)
  .value(">=", Belle2::ModuleCondition::EConditionOperators::c_GE)
  .value("<=", Belle2::ModuleCondition::EConditionOperators::c_SE)
  .value("==", Belle2::ModuleCondition::EConditionOperators::c_EQ)
  .value("!=", Belle2::ModuleCondition::EConditionOperators::c_NE)
  ;
 
  enum_<Module::EModulePropFlags>("ModulePropFlags",
                                  R"(Flags to indicate certain low-level features of modules, see :func:`Module.set_property_flags()`, :func:`Module.has_properties()`. Most useful flags are:
 
.. attribute:: PARALLELPROCESSINGCERTIFIED
 
    This module can be run in parallel processing mode safely (All I/O must be done through the data store, in particular, the module must not write any files.)
 
.. attribute:: HISTOGRAMMANAGER
 
  This module is used to manage histograms accumulated by other modules
 
.. attribute:: TERMINATEINALLPROCESSES
 
  When using parallel processing, call this module's terminate() function in all processes. This will also ensure that there is exactly one process (single-core if no parallel modules found) or at least one input, one main and one output process.
)")
  .value("INPUT", Module::EModulePropFlags::c_Input)
  .value("OUTPUT", Module::EModulePropFlags::c_Output)
  .value("PARALLELPROCESSINGCERTIFIED", Module::EModulePropFlags::c_ParallelProcessingCertified)
  .value("HISTOGRAMMANAGER", Module::EModulePropFlags::c_HistogramManager)
  .value("INTERNALSERIALIZER", Module::EModulePropFlags::c_InternalSerializer)
  .value("TERMINATEINALLPROCESSES", Module::EModulePropFlags::c_TerminateInAllProcesses)
  ;
 
  //Python class definition
  class_<Module, PyModule> module("Module", R"(
Base class for Modules.
 
A module is the smallest building block of the framework.
A typical event processing chain consists of a Path containing
modules. By inheriting from this base class, various types of
modules can be created. To use a module, please refer to
:func:`Path.add_module()`.  A list of modules is available by running
``basf2 -m`` or ``basf2 -m package``, detailed information on parameters is
given by e.g. ``basf2 -m RootInput``.
 
The 'Module Development' section in the manual provides detailed information
on how to create modules, setting parameters, or using return values/conditions:
https://xwiki.desy.de/xwiki/rest/p/f4fa4/#HModuleDevelopment
 
)");
  module
  .def("__str__", &Module::getPathString)
  .def("name", &Module::getName, return_value_policy<copy_const_reference>(),
       "Returns the name of the module. Can be changed via :func:`set_name() <Module.set_name()>`, use :func:`type() <Module.type()>` for identifying a particular module class.")
  .def("type", &Module::getType, return_value_policy<copy_const_reference>(),
       "Returns the type of the module (i.e. class name minus 'Module')")
  .def("set_name", &Module::setName, args("name"), R"(
Set custom name, e.g. to distinguish multiple modules of the same type.
 
>>> path.add_module('EventInfoSetter')
>>> ro = path.add_module('RootOutput', branchNames=['EventMetaData'])
>>> ro.set_name('RootOutput_metadata_only')
>>> print(path)
[EventInfoSetter -> RootOutput_metadata_only]
 
)")
  .def("description", &Module::getDescription, return_value_policy<copy_const_reference>(),
       "Returns the description of this module.")
  .def("package", &Module::getPackage, return_value_policy<copy_const_reference>(),
       "Returns the package this module belongs to.")
  .def("available_params", &_getParamInfoListPython,
       "Return list of all module parameters as `ModuleParamInfo` instances")
  .def("has_properties", &Module::hasProperties, (bp::arg("properties")),
       R"DOCSTRING(Allows to check if the module has the given properties out of `ModulePropFlags` set.
 
>>> if module.has_properties(ModulePropFlags.PARALLELPROCESSINGCERTIFIED):
>>>     ...
 
Parameters:
  properties (int): bitmask of `ModulePropFlags` to check for.
)DOCSTRING")
  .def("set_property_flags", &Module::setPropertyFlags, args("property_mask"),
       "Set module properties in the form of an OR combination of `ModulePropFlags`.");
  {
    // python signature is too crowded, make ourselves
    docstring_options subOptions(true, false, false); //userdef, py sigs, c++ sigs
    module
    .def("if_value", &Module::if_value,
         (bp::arg("expression"), bp::arg("condition_path"), bp::arg("after_condition_path")= Module::EAfterConditionPath::c_End),
         R"DOCSTRING(if_value(expression, condition_path, after_condition_path=AfterConditionPath.END)
 
Sets a conditional sub path which will be executed after this
module if the return value set in the module passes the given ``expression``.
 
Modules can define a return value (int or bool) using ``setReturnValue()``,
which can be used in the steering file to split the Path based on this value, for example
 
>>> module_with_condition.if_value("<1", another_path)
 
In case the return value of the ``module_with_condition`` for a given event is
less than 1, the execution will be diverted into ``another_path`` for this event.
 
You could for example set a special return value if an error occurs, and divert
the execution into a path containing :b2:mod:`RootOutput` if it is found;
saving only the data producing/produced by the error.
 
After a conditional path has executed, basf2 will by default stop processing
the path for this event. This behaviour can be changed by setting the
``after_condition_path`` argument.
 
Parameters:
  expression (str): Expression to determine if the conditional path should be executed.
      This should be one of the comparison operators ``<``, ``>``, ``<=``,
      ``>=``, ``==``, or ``!=`` followed by a numerical value for the return value
  condition_path (Path): path to execute in case the expression is fulfilled
  after_condition_path (AfterConditionPath): What to do once the ``condition_path`` has been executed.
)DOCSTRING")
    .def("if_false", &Module::if_false,
         (bp::arg("condition_path"), bp::arg("after_condition_path")= Module::EAfterConditionPath::c_End),
         R"DOC(if_false(condition_path, after_condition_path=AfterConditionPath.END)
 
Sets a conditional sub path which will be executed after this module if
the return value of the module evaluates to False. This is equivalent to
calling `if_value` with ``expression=\"<1\"``)DOC")
    .def("if_true", &Module::if_true,
         (bp::arg("condition_path"), bp::arg("after_condition_path")= Module::EAfterConditionPath::c_End),
         R"DOC(if_true(condition_path, after_condition_path=AfterConditionPath.END)
 
Sets a conditional sub path which will be executed after this module if
the return value of the module evaluates to True. It is equivalent to
calling `if_value` with ``expression=\">=1\"``)DOC");
  }
  module
  .def("has_condition", &Module::hasCondition,
       "Return true if a conditional path has been set for this module "
       "using `if_value`, `if_true` or `if_false`")
  .def("get_all_condition_paths", &_getAllConditionPathsPython,
       "Return a list of all conditional paths set for this module using "
       "`if_value`, `if_true` or `if_false`")
  .def("get_all_conditions", &_getAllConditionsPython,
       "Return a list of all conditional path expressions set for this module using "
       "`if_value`, `if_true` or `if_false`")
  .add_property("logging", make_function(&Module::getLogConfig, return_value_policy<reference_existing_object>()),
                &Module::setLogConfig)

◆ getAfterConditionPath()

Module::EAfterConditionPath getAfterConditionPath ( ) const

inherited

What to do after the conditional path is finished.

(defaults to c_End if no condition is set)

Definition at line 133 of file Module.cc.

{
  if (m_conditions.empty()) return EAfterConditionPath::c_End;
 
  //okay, a condition was set for this Module...
  if (!m_hasReturnValue) {
    B2FATAL("A condition was set for '" << getName() << "', but the module did not set a return value!");
  }
 
  for (const auto& condition : m_conditions) {
    if (condition.evaluate(m_returnValue)) {
      return condition.getAfterConditionPath();
    }
  }
 
  return EAfterConditionPath::c_End;
}

◆ getAllConditionPaths()

std::vector< std::shared_ptr< Path > > getAllConditionPaths ( ) const

inherited

Return all condition paths currently set (no matter if the condition is true or not).

Definition at line 150 of file Module.cc.

{
  std::vector<std::shared_ptr<Path>> allConditionPaths;
  for (const auto& condition : m_conditions) {
    allConditionPaths.push_back(condition.getPath());
  }
 
  return allConditionPaths;
}

◆ getAllConditions()

const std::vector< ModuleCondition > & getAllConditions ( ) const

inlineinherited

Return all set conditions for this module.

Definition at line 323 of file Module.h.

    {
      return m_conditions;
    }

◆ getCondition()

const ModuleCondition * getCondition ( ) const

inlineinherited

Return a pointer to the first condition (or nullptr, if none was set)

Definition at line 313 of file Module.h.

    {
      if (m_conditions.empty()) {
        return nullptr;
      } else {
        return &m_conditions.front();
      }
    }

◆ getConditionPath()

std::shared_ptr< Path > getConditionPath ( ) const

inherited

Returns the path of the last true condition (if there is at least one, else reaturn a null pointer).

Definition at line 113 of file Module.cc.

{
  PathPtr p;
  if (m_conditions.empty()) return p;
 
  //okay, a condition was set for this Module...
  if (!m_hasReturnValue) {
    B2FATAL("A condition was set for '" << getName() << "', but the module did not set a return value!");
  }
 
  for (const auto& condition : m_conditions) {
    if (condition.evaluate(m_returnValue)) {
      return condition.getPath();
    }
  }
 
  // if none of the conditions were true, return a null pointer.
  return p;
}

◆ getDescription()

const std::string & getDescription ( ) const

inlineinherited

Returns the description of the module.

Definition at line 201 of file Module.h.

201{return m_description;}

◆ getDetectorWeight()

double getDetectorWeight	(	const Particle *	iParticle,
		const std::string &	detName ) const

private

Get the PID weight, $w_{d} \in [-1, 0]$ , for this particle and detector reading it from the payload, if selected.

Otherwise return a default weight of -1.

Definition at line 352 of file TrackIsoCalculatorModule.cc.

{
 
  if (m_excludePIDDetWeights) {
    return -1.;
  }
 
  auto hypo = Const::ChargedStable(std::abs(iParticle->getPDGCode()));
  auto p = iParticle->getP();
  auto theta = iParticle->getMomentum().Theta();
  auto det = this->getDetEnum(detName);
 
  auto detWeight = (*m_DBWeights.get())->getWeight(hypo, det, p, theta);
  // If w > 0, the detector has detrimental impact on PID:
  // the value is reset to zero to prevent the detector from contributing to the score.
  // NB: NaN should stay NaN.
  detWeight = (detWeight < 0 || std::isnan(detWeight)) ? detWeight : 0.0;
 
  return detWeight;
 
}

◆ getDetEnum()

Const::EDetector getDetEnum ( const std::string & detName ) const

inlineprivate

Get the enum type for this detector name.

Definition at line 243 of file TrackIsoCalculatorModule.h.

    {
 
      if (detName == "CDC") return Const::CDC;
      else if (detName == "TOP") return Const::TOP;
      else if (detName == "ARICH") return Const::ARICH;
      else if (detName == "ECL") return Const::ECL;
      else if (detName == "KLM") return Const::KLM;
      else B2FATAL("Unknown detector component: " << detName);
 
    };

◆ getDistAtDetSurface()

double getDistAtDetSurface	(	const Particle *	iParticle,
		const Particle *	jParticle,
		const std::string &	detLayerName ) const

private

Calculate the distance between the points where the two input extrapolated track helices cross the given detector layer's cylindrical surface.

Definition at line 437 of file TrackIsoCalculatorModule.cc.

{
 
  // Radius and z boundaries of the cylinder describing this detector's surface.
  const auto rho = DetectorSurface::detLayerToSurfBoundaries.at(detLayerName).m_rho;
  const auto zfwd = DetectorSurface::detLayerToSurfBoundaries.at(detLayerName).m_zfwd;
  const auto zbwd = DetectorSurface::detLayerToSurfBoundaries.at(detLayerName).m_zbwd;
  // Polar angle boundaries between barrel and endcaps.
  const auto th_fwd = DetectorSurface::detLayerToSurfBoundaries.at(detLayerName).m_th_fwd;
  const auto th_fwd_brl = DetectorSurface::detLayerToSurfBoundaries.at(detLayerName).m_th_fwd_brl;
  const auto th_bwd_brl = DetectorSurface::detLayerToSurfBoundaries.at(detLayerName).m_th_bwd_brl;
  const auto th_bwd = DetectorSurface::detLayerToSurfBoundaries.at(detLayerName).m_th_bwd;
 
  std::string nameExtTheta = "helixExtTheta(" + std::to_string(rho) + "," + std::to_string(zfwd) + "," + std::to_string(zbwd) + ")";
  if (m_useHighestProbMassForExt) {
    nameExtTheta.replace(nameExtTheta.size() - 1, 1, ", 1)");
  }
  const auto iExtTheta = std::get<double>(Variable::Manager::Instance().getVariable(nameExtTheta)->function(iParticle));
  const auto jExtTheta = std::get<double>(Variable::Manager::Instance().getVariable(nameExtTheta)->function(jParticle));
 
  std::string nameExtPhi = "helixExtPhi(" + std::to_string(rho) + "," + std::to_string(zfwd) + "," + std::to_string(zbwd) + ")";
  if (m_useHighestProbMassForExt) {
    nameExtPhi.replace(nameExtPhi.size() - 1, 1, ", 1)");
  }
  const auto iExtPhi = std::get<double>(Variable::Manager::Instance().getVariable(nameExtPhi)->function(iParticle));
  const auto jExtPhi = std::get<double>(Variable::Manager::Instance().getVariable(nameExtPhi)->function(jParticle));
 
  const auto iExtInBarrel = (iExtTheta >= th_fwd_brl && iExtTheta < th_bwd_brl);
  const auto jExtInBarrel = (jExtTheta >= th_fwd_brl && jExtTheta < th_bwd_brl);
 
  const auto iExtInFWDEndcap = (iExtTheta >= th_fwd && iExtTheta < th_fwd_brl);
  const auto jExtInFWDEndcap = (jExtTheta >= th_fwd && jExtTheta < th_fwd_brl);
 
  const auto iExtInBWDEndcap = (iExtTheta >= th_bwd_brl && iExtTheta < th_bwd);
  const auto jExtInBWDEndcap = (jExtTheta >= th_bwd_brl && jExtTheta < th_bwd);
 
  if (boost::contains(detLayerName, "CDC") || boost::contains(detLayerName, "TOP")) {
 
    // If any of the two extrapolated tracks is not in the barrel region of the CDC/TOP, the distance is undefined.
    if (!iExtInBarrel || !jExtInBarrel) {
      return std::numeric_limits<double>::quiet_NaN();
    }
 
    // For CDC and TOP, we calculate the distance between the points where the two input
    // extrapolated track helices cross the input detector's cylindrical surface
    // on the (rho, phi) plane. Namely, this is the cord length of the arc
    // that subtends deltaPhi.
    auto diffPhi = jExtPhi - iExtPhi;
    if (std::abs(diffPhi) > M_PI) {
      diffPhi = (diffPhi > M_PI) ? diffPhi - 2 * M_PI :  2 * M_PI + diffPhi;
    }
 
    return 2.0 * rho * sin(std::abs(diffPhi) / 2.0);
 
  } else {
 
    if (boost::contains(detLayerName, "ARICH")) {
      // If any of the two tracks is not in the ARICH theta acceptance, the distance is undefined.
      if (!iExtInFWDEndcap || !jExtInFWDEndcap) {
        return std::numeric_limits<double>::quiet_NaN();
      }
    }
    if (boost::contains(detLayerName, "ECL") || boost::contains(detLayerName, "KLM")) {
 
      // For ECL and KLM, we require track pairs to be both in the barrel,
      // both in the FWD endcap, or both in the FWD endcap. Otherwise, the distance is undefined.
      if (
        !(iExtInBarrel && jExtInBarrel) &&
        !(iExtInFWDEndcap && jExtInFWDEndcap) &&
        !(iExtInBWDEndcap && jExtInBWDEndcap)
      ) {
        return std::numeric_limits<double>::quiet_NaN();
      }
    }
 
    // Ok, we know theta and phi.
    // Let's extract (spherical) R by using the transformation:
    //
    // 1. rho = r * sin(theta)
    // 2. phi = phi
    // 3. z = r * cos(theta)
    //
    // The formula to be inverted depends on where each extrapolated track's theta is found:
    // if in barrel, use 1. (rho is known), if in fwd/bwd endcap, use 3. (zfwd/zbwd is known).
 
    const auto iExtR = (iExtTheta >= th_fwd_brl && iExtTheta < th_bwd_brl) ? rho / sin(iExtTheta) : ((iExtTheta >= th_fwd
                       && iExtTheta < th_fwd_brl) ? zfwd / cos(iExtTheta) : zbwd / cos(iExtTheta));
    const auto jExtR = (jExtTheta >= th_fwd_brl && jExtTheta < th_bwd_brl) ? rho / sin(jExtTheta) : ((jExtTheta >= th_fwd
                       && jExtTheta < th_fwd_brl) ? zfwd / cos(jExtTheta) : zbwd / cos(jExtTheta));
 
    return sqrt((iExtR * iExtR) + (jExtR * jExtR) - 2 * iExtR * jExtR * (sin(iExtTheta) * sin(jExtTheta) * cos(iExtPhi - jExtPhi)
                + cos(iExtTheta) * cos(jExtTheta)));
 
  }
 
  return std::numeric_limits<double>::quiet_NaN();
 
}

◆ getDistThreshold()

double getDistThreshold	(	Const::EDetector	det,
		int	layer ) const

inlineprivate

Get the threshold value per detector layer for the distance to closest ext.

helix that is used to define locally isolated particles at that layer.

Parameters

det	the input PID detector.
layer	the input detector layer.

Definition at line 229 of file TrackIsoCalculatorModule.h.

    {
      auto detAndLayer = std::make_pair(Const::parseDetectors(det), layer);
      return m_distThreshPerDetLayer.at(detAndLayer);
    };

◆ getFileNames()

virtual std::vector< std::string > getFileNames ( bool outputFiles )

inlinevirtualinherited

Return a list of output filenames for this modules.

This will be called when basf2 is run with "--dry-run" if the module has set either the c_Input or c_Output properties.

If the parameter outputFiles is false (for modules with c_Input) the list of input filenames should be returned (if any). If outputFiles is true (for modules with c_Output) the list of output files should be returned (if any).

If a module has sat both properties this member is called twice, once for each property.

The module should return the actual list of requested input or produced output filenames (including handling of input/output overrides) so that the grid system can handle input/output files correctly.

This function should return the same value when called multiple times. This is especially important when taking the input/output overrides from Environment as they get consumed when obtained so the finalized list of output files should be stored for subsequent calls.

Reimplemented in RootInputModule, RootOutputModule, and StorageRootOutputModule.

Definition at line 133 of file Module.h.

    {
      return std::vector<std::string>();
    }

◆ getLogConfig()

LogConfig & getLogConfig ( )

inlineinherited

Returns the log system configuration.

Definition at line 224 of file Module.h.

224{return m_logConfig;}

◆ getModules()

std::list< ModulePtr > getModules ( ) const

inlineoverrideprivatevirtualinherited

no submodules, return empty list

Implements PathElement.

Definition at line 505 of file Module.h.

505{ return std::list<ModulePtr>(); }

◆ getName()

const std::string & getName ( ) const

inlineinherited

Returns the name of the module.

This can be changed via e.g. set_name() in the steering file to give more useful names if there is more than one module of the same type.

For identifying the type of a module, using getType() (or type() in Python) is recommended.

Definition at line 186 of file Module.h.

186{return m_name;}

◆ getPackage()

const std::string & getPackage ( ) const

inlineinherited

Returns the package this module is in.

Definition at line 196 of file Module.h.

196{return m_package;}

◆ getParamInfoListPython()

std::shared_ptr< boost::python::list > getParamInfoListPython ( ) const

inherited

Returns a python list of all parameters.

Each item in the list consists of the name of the parameter, a string describing its type, a python list of all default values and the description of the parameter.

Returns: A python list containing the parameters of this parameter list.

Definition at line 279 of file Module.cc.

{
  return m_moduleParamList.getParamInfoListPython();
}

◆ getParamList()

const ModuleParamList & getParamList ( ) const

inlineinherited

Return module param list.

Definition at line 362 of file Module.h.

362{ return m_moduleParamList; }

◆ getPathString()

std::string getPathString ( ) const

overrideprivatevirtualinherited

return the module name.

Implements PathElement.

Definition at line 192 of file Module.cc.

{
 
  std::string output = getName();
 
  for (const auto& condition : m_conditions) {
    output += condition.getString();
  }
 
  return output;
}

◆ getReturnValue()

int getReturnValue ( ) const

inlineinherited

Return the return value set by this module.

This value is only meaningful if hasReturnValue() is true

Definition at line 380 of file Module.h.

380{ return m_returnValue; }

◆ getType()

const std::string & getType ( ) const

inherited

Returns the type of the module (i.e.

class name minus 'Module')

Definition at line 41 of file Module.cc.

{
  if (m_type.empty())
    B2FATAL("Module type not set for " << getName());
  return m_type;
}

◆ getWeightedSumInvDists()

double getWeightedSumInvDists	(	const Particle *	iParticle,
		const std::string &	detName,
		const float	detWeight ) const

private

Get the sum of the inverse (scaled) minimum distances over the given detector $d$ layers, weighted by the PID detector separation score (if requested):

$\begin{equation} S_{d} = \sum_{d} w_{d} * \frac{D_{d}^{thresh}}{D_{d}} \end{equation}$

The distance $D_{d}$ to the closest track helix extrapolation defined in double getDistAtDetSurface() is used. The scaling at the numerator is the threshold distance for this detector to define close-by tracks. Note that if the PID detector weighting is switched off, $w_{d} = -1$ . By construction, $S_{d}$ is a negative number.

Definition at line 413 of file TrackIsoCalculatorModule.cc.

{
 
  auto det = this->getDetEnum(detName);
 
  double sumInvDists(0.);
  for (const auto& iLayer : DetectorSurface::detToLayers.at(detName)) {
 
    auto iDetLayer = detName + std::to_string(iLayer);
    auto distVar = m_detLayerToDistVariable.at(iDetLayer);
    auto threshDist = this->getDistThreshold(det, iLayer);
 
    if (iParticle->hasExtraInfo(distVar)) {
      sumInvDists += threshDist / iParticle->getExtraInfo(distVar);
    }
 
  }
 
  return detWeight * sumInvDists;
 
}

◆ getWeightedSumNonIsoLayers()

double getWeightedSumNonIsoLayers	(	const Particle *	iParticle,
		const std::string &	detName,
		const float	detWeight ) const

private

Get the sum of layers with a close-by track, divided by the total number of layers, for the given detector $d$ , weighted by the PID detector separation score (if requested):

$\begin{equation} s_{d} = 1 - \left(-w_{d} \cdot \frac{n_{d}}{N_{d}}\right). \end{equation}$

where $n_{d}$ is the number of layers where a close-enough particle is found, and $w_{d}$ is the weight that each sub-detector has on the PID of the given particle hypothesis (if m_excludePIDDetWeights = true):

The distance to closest track helix extrapolation defined in double getDistAtDetSurface() is used. Note that if the PID detector weighting is switched off, $w_{d} = -1$ .

Definition at line 375 of file TrackIsoCalculatorModule.cc.

{
 
  auto det = this->getDetEnum(detName);
  auto nLayers = DetectorSurface::detToLayers.at(detName).size();
 
  unsigned int n(0);
  for (const auto& iLayer : DetectorSurface::detToLayers.at(detName)) {
    auto iDetLayer = detName + std::to_string(iLayer);
    auto distVar = m_detLayerToDistVariable.at(iDetLayer);
    auto threshDist = this->getDistThreshold(det, iLayer);
 
    if (iParticle->hasExtraInfo(distVar)) {
      if (iParticle->getExtraInfo(distVar) < threshDist) {
        n++;
      }
    }
 
  }
 
  if (!n) {
    B2DEBUG(12, "\nNo close-enough neighbours to this particle in the " << detName << " were found.");
  }
 
  if (n > nLayers) {
    B2FATAL("\nTotal layers in " << detName << ": N=" << nLayers
            << "\n"
            << "Layers w/ a close-enough particle: n=" << n
            << "\n"
            << "n > N ?? Abort...");
  }
 
  return 1. - (-detWeight * (n / nLayers));
 
}

◆ hasCondition()

bool hasCondition ( ) const

inlineinherited

Returns true if at least one condition was set for the module.

Definition at line 310 of file Module.h.

310{ return not m_conditions.empty(); };

◆ hasProperties()

bool hasProperties ( unsigned int propertyFlags ) const

inherited

Returns true if all specified property flags are available in this module.

Parameters

propertyFlags Ored EModulePropFlags which should be compared with the module flags.

Definition at line 160 of file Module.cc.

{
  return (propertyFlags & m_propertyFlags) == propertyFlags;
}

◆ hasReturnValue()

bool hasReturnValue ( ) const

inlineinherited

Return true if this module has a valid return value set.

Definition at line 377 of file Module.h.

377{ return m_hasReturnValue; }

◆ hasUnsetForcedParams()

bool hasUnsetForcedParams ( ) const

inherited

Returns true and prints error message if the module has unset parameters which the user has to set in the steering file.

Definition at line 166 of file Module.cc.

{
  auto missing = m_moduleParamList.getUnsetForcedParams();
  std::string allMissing = "";
  for (const auto& s : missing)
    allMissing += s + " ";
  if (!missing.empty())
    B2ERROR("The following required parameters of Module '" << getName() << "' were not specified: " << allMissing <<
            "\nPlease add them to your steering file.");
  return !missing.empty();
}

◆ if_false()

void if_false	(	const std::shared_ptr< Path > &	path,
		EAfterConditionPath	afterConditionPath = EAfterConditionPath::c_End )

inherited

A simplified version to add a condition to the module.

Please note that successive calls of this function will add more than one condition to the module. If more than one condition results in true, only the last of them will be used.

Please be careful: Avoid creating cyclic paths, e.g. by linking a condition to a path which is processed before the path where this module is located in.

It is equivalent to the if_value() method, using the expression "<1". This method is meant to be used together with the setReturnValue(bool value) method.

Parameters

path	Shared pointer to the Path which will be executed if the return value is false.
afterConditionPath	What to do after executing 'path'.

Definition at line 85 of file Module.cc.

{
  if_value("<1", path, afterConditionPath);
}

◆ if_true()

void if_true	(	const std::shared_ptr< Path > &	path,
		EAfterConditionPath	afterConditionPath = EAfterConditionPath::c_End )

inherited

A simplified version to set the condition of the module.

Please note that successive calls of this function will add more than one condition to the module. If more than one condition results in true, only the last of them will be used.

Please be careful: Avoid creating cyclic paths, e.g. by linking a condition to a path which is processed before the path where this module is located in.

It is equivalent to the if_value() method, using the expression ">=1". This method is meant to be used together with the setReturnValue(bool value) method.

Parameters

path	Shared pointer to the Path which will be executed if the return value is true.
afterConditionPath	What to do after executing 'path'.

Definition at line 90 of file Module.cc.

{
  if_value(">=1", path, afterConditionPath);
}

◆ if_value()

void if_value	(	const std::string &	expression,
		const std::shared_ptr< Path > &	path,
		EAfterConditionPath	afterConditionPath = EAfterConditionPath::c_End )

inherited

Add a condition to the module.

Please note that successive calls of this function will add more than one condition to the module. If more than one condition results in true, only the last of them will be used.

See https://xwiki.desy.de/xwiki/rest/p/a94f2 or ModuleCondition for a description of the syntax.

Please be careful: Avoid creating cyclic paths, e.g. by linking a condition to a path which is processed before the path where this module is located in.

Parameters

expression	The expression of the condition.
path	Shared pointer to the Path which will be executed if the condition is evaluated to true.
afterConditionPath	What to do after executing 'path'.

Definition at line 79 of file Module.cc.

{
  m_conditions.emplace_back(expression, path, afterConditionPath);
}

◆ initialize()

void initialize ( void )

overridevirtual

Use this to initialize resources or memory your module needs.

Also register any outputs of your module (StoreArrays, StoreObjPtrs, relations) here, see the respective class documentation for details.

Reimplemented from Module.

Definition at line 62 of file TrackIsoCalculatorModule.cc.

{
  m_event_metadata.isRequired();
 
  if (!m_excludePIDDetWeights) {
    m_DBWeights = std::make_unique<DBObjPtr<PIDDetectorWeights>>(m_payloadName);
  }
 
  bool valid = m_decaydescriptor.init(m_decayString);
  if (!valid) {
    B2ERROR("Decay string " << m_decayString << " is invalid.");
  }
 
  const DecayDescriptorParticle* mother = m_decaydescriptor.getMother();
 
  m_pListTarget.isRequired(mother->getFullName());
  m_nSelectedDaughters = m_decaydescriptor.getSelectionNames().size();
 
  if (m_nSelectedDaughters > 1) {
    B2ERROR("More than one daughter is selected in the decay string " << m_decayString << ".");
  }
 
  m_pListReference.isRequired(m_pListReferenceName);
 
  B2INFO("Calculating track-based isolation variables for the decay string: "
         << m_decayString
         << " using the reference ParticleList: "
         << m_pListReferenceName
         << ".");
 
  if (!onlySelectedStdChargedInDecay()) {
    B2ERROR("Selected ParticleList in decay string:"
            << m_decayString
            << " and/or reference ParticleList: "
            << m_pListReferenceName
            << " is not that of a valid particle in Const::chargedStableSet!");
  }
 
  if (m_useHighestProbMassForExt) {
    B2INFO("Will use track fit result for the most probable mass hypothesis in helix extrapolation.");
  }
 
  std::string detNamesConcat("");
 
  for (auto& detName : m_detNames) {
 
    // Ensure we use uppercase detector labels.
    boost::to_upper(detName);
 
    detNamesConcat += "_" + detName;
 
    // Define the name(s) of the variables for this detector to be stored as extraInfo.
    for (const auto& iLayer : DetectorSurface::detToLayers.at(detName)) {
 
 
      auto iDetLayer = detName + std::to_string(iLayer);
 
      auto distVarName = "distToClosestTrkAt" + iDetLayer + "_VS_" + m_pListReferenceName;
      if (m_useHighestProbMassForExt) {
        distVarName += "__useHighestProbMassForExt";
      }
      auto refPartIdxVarName =  "idxOfClosestPartAt" + iDetLayer + "In_" + m_pListReferenceName;
 
      m_detLayerToDistVariable.insert(std::make_pair(iDetLayer, distVarName));
      m_detLayerToRefPartIdxVariable.insert(std::make_pair(iDetLayer, refPartIdxVarName));
 
    }
 
    // Isolation score variable.
    m_isoScoreVariable = "trkIsoScore" + detNamesConcat + "_VS_" + m_pListReferenceName;
    m_isoScoreVariableAsWeightedAvg = "trkIsoScoreAsWeightedAvg" + detNamesConcat + "_VS_" + m_pListReferenceName;
    if (m_useHighestProbMassForExt) {
      m_isoScoreVariable += "__useHighestProbMassForExt";
      m_isoScoreVariableAsWeightedAvg += "__useHighestProbMassForExt";
    }
  }
 
}

◆ onlySelectedStdChargedInDecay()

bool onlySelectedStdChargedInDecay ( )

private

Check whether input particle list and reference list are of a valid charged stable particle.

Definition at line 538 of file TrackIsoCalculatorModule.cc.

{
 
  bool checkPList = false;
 
  if (!m_nSelectedDaughters) {
    checkPList = Const::chargedStableSet.find(abs(m_decaydescriptor.getMother()->getPDGCode())) != Const::invalidParticle;
  } else {
    for (int pdgcode : m_decaydescriptor.getSelectionPDGCodes()) {
      checkPList = Const::chargedStableSet.find(abs(pdgcode)) != Const::invalidParticle;
      if (!checkPList) {
        break;
      }
    }
  }
 
  DecayDescriptor dd;
  bool checkPListReference = false;
  if (dd.init(m_pListReferenceName)) {
    checkPListReference = Const::chargedStableSet.find(abs(dd.getMother()->getPDGCode())) != Const::invalidParticle;
  }
 
  return (checkPList and checkPListReference);
 
};

◆ setAbortLevel()

void setAbortLevel ( int abortLevel )

inherited

Configure the abort log level.

Definition at line 67 of file Module.cc.

{
  m_logConfig.setAbortLevel(static_cast<LogConfig::ELogLevel>(abortLevel));
}

◆ setDebugLevel()

void setDebugLevel ( int debugLevel )

inherited

Configure the debug messaging level.

Definition at line 61 of file Module.cc.

{
  m_logConfig.setDebugLevel(debugLevel);
}

◆ setDescription()

void setDescription ( const std::string & description )

protectedinherited

Sets the description of the module.

Parameters

description A description of the module.

Definition at line 214 of file Module.cc.

{
  m_description = description;
}

◆ setLogConfig()

void setLogConfig ( const LogConfig & logConfig )

inlineinherited

Set the log system configuration.

Definition at line 229 of file Module.h.

229{m_logConfig = logConfig;}

◆ setLogInfo()

void setLogInfo	(	int	logLevel,
		unsigned int	logInfo )

inherited

Configure the printed log information for the given level.

Parameters

logLevel	The log level (one of LogConfig::ELogLevel)
logInfo	What kind of info should be printed? ORed combination of LogConfig::ELogInfo flags.

Definition at line 73 of file Module.cc.

{
  m_logConfig.setLogInfo(static_cast<LogConfig::ELogLevel>(logLevel), logInfo);
}

◆ setLogLevel()

void setLogLevel ( int logLevel )

inherited

Configure the log level.

Definition at line 55 of file Module.cc.

{
  m_logConfig.setLogLevel(static_cast<LogConfig::ELogLevel>(logLevel));
}

◆ setName()

void setName ( const std::string & name )

inlineinherited

Set the name of the module.

Note: The module name is set when using the REG_MODULE macro, but the module can be renamed before calling process() using the set_name() function in your steering file.

Parameters

name	The name of the module

Definition at line 213 of file Module.h.

213{ m_name = name; };

◆ setParamList()

void setParamList ( const ModuleParamList & params )

inlineprotectedinherited

Replace existing parameter list.

Definition at line 500 of file Module.h.

500{ m_moduleParamList = params; }

◆ setParamPython()

void setParamPython	(	const std::string &	name,
		const boost::python::object &	pyObj )

privateinherited

Implements a method for setting boost::python objects.

The method supports the following types: list, dict, int, double, string, bool The conversion of the python object to the C++ type and the final storage of the parameter value is done in the ModuleParam class.

Parameters

name	The unique name of the parameter.
pyObj	The object which should be converted and stored as the parameter value.

Definition at line 234 of file Module.cc.

{
  LogSystem& logSystem = LogSystem::Instance();
  logSystem.updateModule(&(getLogConfig()), getName());
  try {
    m_moduleParamList.setParamPython(name, pyObj);
  } catch (std::runtime_error& e) {
    throw std::runtime_error("Cannot set parameter '" + name + "' for module '"
                             + m_name + "': " + e.what());
  }
 
  logSystem.updateModule(nullptr);
}

◆ setParamPythonDict()

void setParamPythonDict ( const boost::python::dict & dictionary )

privateinherited

Implements a method for reading the parameter values from a boost::python dictionary.

The key of the dictionary has to be the name of the parameter and the value has to be of one of the supported parameter types.

Parameters

dictionary The python dictionary from which the parameter values are read.

Definition at line 249 of file Module.cc.

{
 
  LogSystem& logSystem = LogSystem::Instance();
  logSystem.updateModule(&(getLogConfig()), getName());
 
  boost::python::list dictKeys = dictionary.keys();
  int nKey = boost::python::len(dictKeys);
 
  //Loop over all keys in the dictionary
  for (int iKey = 0; iKey < nKey; ++iKey) {
    boost::python::object currKey = dictKeys[iKey];
    boost::python::extract<std::string> keyProxy(currKey);
 
    if (keyProxy.check()) {
      const boost::python::object& currValue = dictionary[currKey];
      setParamPython(keyProxy, currValue);
    } else {
      B2ERROR("Setting the module parameters from a python dictionary: invalid key in dictionary!");
    }
  }
 
  logSystem.updateModule(nullptr);
}

◆ setPropertyFlags()

void setPropertyFlags ( unsigned int propertyFlags )

inherited

Sets the flags for the module properties.

Parameters

propertyFlags bitwise OR of EModulePropFlags

Definition at line 208 of file Module.cc.

{
  m_propertyFlags = propertyFlags;
}

◆ setReturnValue() [1/2]

void setReturnValue ( bool value )

protectedinherited

Sets the return value for this module as bool.

The bool value is saved as an integer with the convention 1 meaning true and 0 meaning false. The value can be used in the steering file to divide the analysis chain into several paths.

Parameters

value The value of the return value.

Definition at line 227 of file Module.cc.

{
  m_hasReturnValue = true;
  m_returnValue = value;
}

◆ setReturnValue() [2/2]

void setReturnValue ( int value )

protectedinherited

Sets the return value for this module as integer.

The value can be used in the steering file to divide the analysis chain into several paths.

Parameters

value The value of the return value.

Definition at line 220 of file Module.cc.

{
  m_hasReturnValue = true;
  m_returnValue = value;
}

◆ setType()

void setType ( const std::string & type )

protectedinherited

Set the module type.

Only for use by internal modules (which don't use the normal REG_MODULE mechanism).

Definition at line 48 of file Module.cc.

{
  if (!m_type.empty())
    B2FATAL("Trying to change module type from " << m_type << " is not allowed, the value is assumed to be fixed.");
  m_type = type;
}

◆ terminate()

virtual void terminate ( void )

inlinevirtualinherited

This method is called at the end of the event processing.

This method is called only once after the event processing finished. Use this method for cleaning up, closing files, etc.

std::unordered_map<std::string, std::string> m_detLayerToDistVariable

private

Map that associates to each detector layer (e.g., 'CDC6') the name of the variable representing the distance to the closest particle in the reference list, based on the track helix extrapolation.

Each variable is added as particle extraInfo.

Definition at line 96 of file TrackIsoCalculatorModule.h.

◆ m_detLayerToRefPartIdxVariable

std::unordered_map<std::string, std::string> m_detLayerToRefPartIdxVariable

private

Map that associates to each detector layer (e.g, 'CDC6') the name of the variable representing the mdst array index of the closest particle in the reference list.

Each variable is added as particle extraInfo.

Definition at line 103 of file TrackIsoCalculatorModule.h.

◆ m_detNames

std::vector<std::string> m_detNames

private

The list of names of the detectors at whose inner (cylindrical) surface we extrapolate each track's polar and azimuthal angle.

Definition at line 88 of file TrackIsoCalculatorModule.h.

◆ m_distThreshPerDetLayer

std::map<std::pair<std::string, int>, double> m_distThreshPerDetLayer

private

Initial value:

= {
      { {Const::parseDetectors(Const::CDC), 0}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 1}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 2}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 3}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 4}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 5}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 6}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 7}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 8}, 5.0 },
      { {Const::parseDetectors(Const::TOP), 0}, 22.0 },
      { {Const::parseDetectors(Const::ARICH), 0}, 10.0 },
      { {Const::parseDetectors(Const::ECL), 0}, 36.0 },
      { {Const::parseDetectors(Const::ECL), 1}, 36.0 },
      { {Const::parseDetectors(Const::KLM), 0}, 20.0 }
    }

Threshold values for the distance (in [cm]) to closest ext.

helix to define isolated particles. One for each detector layer.

Definition at line 121 of file TrackIsoCalculatorModule.h.

                                                                      {
      { {Const::parseDetectors(Const::CDC), 0}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 1}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 2}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 3}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 4}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 5}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 6}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 7}, 5.0 },
      { {Const::parseDetectors(Const::CDC), 8}, 5.0 },
      { {Const::parseDetectors(Const::TOP), 0}, 22.0 },
      { {Const::parseDetectors(Const::ARICH), 0}, 10.0 },
      { {Const::parseDetectors(Const::ECL), 0}, 36.0 },
      { {Const::parseDetectors(Const::ECL), 1}, 36.0 },
      { {Const::parseDetectors(Const::KLM), 0}, 20.0 }
    };

◆ m_event_metadata

StoreObjPtr<EventMetaData> m_event_metadata

private

The event information.

Used for debugging purposes.

Definition at line 141 of file TrackIsoCalculatorModule.h.

◆ m_excludePIDDetWeights

bool m_excludePIDDetWeights

private

Exclude the PID detector weights for the isolation score definition.

Definition at line 167 of file TrackIsoCalculatorModule.h.

◆ m_hasReturnValue

bool m_hasReturnValue

privateinherited

True, if the return value is set.

Definition at line 517 of file Module.h.

◆ m_isoScoreVariable

std::string m_isoScoreVariable

private

The name of the variable representing the track isolation score.

Added as particle extraInfo.

Definition at line 109 of file TrackIsoCalculatorModule.h.

◆ m_isoScoreVariableAsWeightedAvg

std::string m_isoScoreVariableAsWeightedAvg

bool m_useHighestProbMassForExt

private

If this option is set, the helix extrapolation for the target and reference particles will use the track fit result for the most probable mass hypothesis, namely, the one that gives the highest chi2Prob of the fit.

Definition at line 162 of file TrackIsoCalculatorModule.h.

The documentation for this class was generated from the following files:

analysis/modules/TrackIsoCalculator/include/TrackIsoCalculatorModule.h
analysis/modules/TrackIsoCalculator/src/TrackIsoCalculatorModule.cc

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

◆ EAfterConditionPath

Member Enumeration Documentation

◆ EModulePropFlags

Constructor & Destructor Documentation

◆ TrackIsoCalculatorModule()

◆ ~TrackIsoCalculatorModule()

Member Function Documentation

◆ beginRun()

◆ clone()

◆ def_beginRun()

◆ def_endRun()

◆ def_event()

◆ def_initialize()

◆ def_terminate()

◆ endRun()

◆ evalCondition()

◆ event()

◆ exposePythonAPI()

◆ getAfterConditionPath()

◆ getAllConditionPaths()

◆ getAllConditions()

◆ getCondition()

◆ getConditionPath()

◆ getDescription()

◆ getDetectorWeight()

◆ getDetEnum()

◆ getDistAtDetSurface()

◆ getDistThreshold()

◆ getFileNames()

◆ getLogConfig()

◆ getModules()

◆ getName()

◆ getPackage()

◆ getParamInfoListPython()

◆ getParamList()

◆ getPathString()

◆ getReturnValue()

◆ getType()

◆ getWeightedSumInvDists()

◆ getWeightedSumNonIsoLayers()

◆ hasCondition()

◆ hasProperties()

◆ hasReturnValue()

◆ hasUnsetForcedParams()

◆ if_false()

◆ if_true()

◆ if_value()

◆ initialize()

◆ onlySelectedStdChargedInDecay()

◆ setAbortLevel()

◆ setDebugLevel()

◆ setDescription()

◆ setLogConfig()

◆ setLogInfo()

◆ setLogLevel()

◆ setName()

◆ setParamList()

◆ setParamPython()

◆ setParamPythonDict()

◆ setPropertyFlags()

◆ setReturnValue() [1/2]

◆ setReturnValue() [2/2]

◆ setType()

◆ terminate()

Member Data Documentation

◆ m_conditions

◆ m_DBWeights

◆ m_decaydescriptor

◆ m_decayString

◆ m_description

◆ m_detLayerToDistVariable

◆ m_detLayerToRefPartIdxVariable